Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49540 1051 / 0 ELP2, AtELP2 Elongator subunit 2, elongator protein 2 (.1.2) AT1G73720 52 / 2e-06 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT3G49660 50 / 3e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G32990 50 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 50 / 4e-06 RACK1B_AT receptor for activated C kinase 1B (.1) AT1G18080 50 / 4e-06 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT2G26060 49 / 6e-06 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G44530 49 / 2e-05 HIRA homolog of histone chaperone HIRA (.1.2) AT2G43770 47 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18130 47 / 3e-05 RACK1C_AT receptor for activated C kinase 1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013487 [exp] 1604 / 0 AT1G49540 1113 / 0.0 Elongator subunit 2, elongator protein 2 (.1.2) Lus10021365 [exp] 57 / 3e-08 AT2G26060 482 / 2e-172 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039597 [exp] 54 / 5e-07 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10038425 [exp] 52 / 2e-06 AT1G73720 956 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10023381 [exp] 51 / 3e-06 AT1G73720 953 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10001410 [exp] 50 / 7e-06 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 49 / 7e-06 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 49 / 7e-06 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10001045 [exp] 50 / 8e-06 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G119600 [exp] 1214 / 0 AT1G49540 1168 / 0.0 Elongator subunit 2, elongator protein 2 (.1.2) Potri.008G124550 [exp] 51 / 4e-08 AT1G49540 47 / 9e-08 Elongator subunit 2, elongator protein 2 (.1.2) Potri.001G221000 [exp] 56 / 8e-08 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G212800 [exp] 56 / 8e-08 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.013G116900 [exp] 52 / 9e-07 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.013G079600 [exp] 52 / 2e-06 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.005G148500 [exp] 51 / 2e-06 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G041200 [exp] 51 / 3e-06 AT3G18060 1000 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.011G156900 [exp] 51 / 3e-06 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.012G049200 [exp] 50 / 5e-06 AT3G18060 1018 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10007953 pacid=23162319 polypeptide=Lus10007953 locus=Lus10007953.g ID=Lus10007953.BGIv1.0 annot-version=v1.0 ATGACAGAGAATATCGAGGCTGCTACTGTTGAAGTGAACAGCCTGTTCATCGCCGCCGGATGCAACCGGATAGTGAACAACGTCTCATGGGGCGCCTCCG GTCTGATCTCCTTCGGTTCTCAGAACGCCGTCGCCATCTTCTGCCCCAAGACTGCTCGGATTTTGACAACCCTTCCAGGCCACAAAGCTTCTGTTAACTG CACTCAATGGATTCCCAGTACCAAATTTGCGTTTAAAGCAAAAATGTTGGAGAGGCATTATCTTCTATCAGGAGATTCTGAGGGTGTGATCATTCTGTGG GAGTTCTCTTTGGTCGTAAGAAAGTGGAGGCTAGTGATGAAACTACCGCAATTACACAAAAAGGGTGTTACGTGCATAACTGGAACCATGGTTTCGGAGA CGGATACGATCTTTGCTTCTAGTTCATCTGATGGTTCTGTGAATATATGGGAGCTGATCGTTCCTGTTATTTCTGAAGGTGAATGCAACTTGTCATGTTT CGAGAGCCTTTCGGTCGGTTCGAAGCCTATGGTTGCTTTGTCACTAGCAGAGTTACCTGGAAGTTCTGAACATCTTGTCCTGGCAATGGAGAGGATCCGG AGTCTAGACTTCTCTTTACCAATACGGAAAGAGGGTGAATCAGACTGCATCATGCTCGTCAGCGCATCTCAAGACAAAGGCATACGCATCTGGAAGATGT CTTTGCTCGGTTTATCCGATGGACGAAGGAAAGAAATCACGTTAGCATCATACATCGAGGGTCCGGTAATTATGGCCGGATCTTCTTCCTATCAAGTGTC GTTGGAATCTCTTCTGATCGGACACGAGGACTGGGTTTATTCAGTCGAATGGCAACCCCCCTCGAAAGACCTCAATCAACCGCAGTGCATATTATCTGCC TCGATGGATAAGACAATGATGATCTGGCAGCCGGAAAGGAGAAGTGGTATATGGATGAACGTGGTTACCGTTGGAGAGTTGAGCCATTCTGCATTGGGGT TTTATGGAGGCCATTGGAGTCTGGACGGACAGTCGATTTTGGCACATGGTTATGGTGGAGCTTTCCATATGTGGAGGAATGTTGGTGTTGATGGAGATAA TTGGATGCCGCAGAAGGTTCCTTCTGGACATTTCGCTCCCGTGAGTGATATTTCTTGGGCAAGACGTGGTCAATATATTTTGACAGTCAGCCATGATCAG ACGACTCGGATTTTCGCACCATGGAAAACTGAAGCATCTTCATTAGATGGGCCGTCGTCATGGCATGAAATCGCTCGCCCTCAAGTTCATGGCCATGATA TAAACTGTGTGGCCTTCATTGAAGGTAAAAGGAACCAGCGATATATCTGTGGAGCTGATGAGAAAGTTGCCAGAGTGTTTGAAGCTCCTTTATCATTTCT AAAGACATTGAGCCACGCCGATCAACAGTCTGCTCTTACCGAAGACCTCCAAGTGGAGGTTCAGATTTTGGGAGCAAACATGTCTGCACTCGGCCTTTCG CAGAAACCGATTTACCAGAGCGCTGGGCAAGAGACACCGCGTGCGAATGTTAGTGATGGCATCGACACCCTTGAAAGTGTTCCCGATGCTGTTCCAGCTA TATTTACCGAACCTCCTATTGAGGATCAATTGGCATATCATACGCTGTGGCCGGAGTCACACAAGCTTTATGGTCACGGGAATGAGCTCTTCTCTTTGTG CTGCGATCATGAGGGCGAGCTTGTAGCTTCGTCGTGTAAGGCACAGTCACAATCGGTGGCGGAAATATGGCTGTGGCAAGTTGGTACATGGAAAGCAGTT GGTCGCTTGCAGTCTCATACGTTAACCGTCACACAGATGGAGTTCTCTCATGATGACAGTATGCTTCTTGCCGTCTCGAGAGATCGACAGTTCTCTGTCT TCGGTATCAAAAGAACCGGAGATGAAATCAGTTACCAGCTCCTAGCAAAGCAGGAAGCGCACAAAAGAATCATATGGTCATGTTCCTGGAACCCATTCGG CCACGAGTTTGCAACTGGTTCTCGAGACAAGACGGTCAAGATCTGGACAGTCGACGGATGCAATAAATCACCGTCAACGAGGCTGCTAGCAACCTTACCG CCATTCAACAGCAGTGTCACGGCCGTGGCTTGGTTTGGCATCGATCGTGACAGAGGCCACAGACTCCTCGCAGTTGGGATGGAGAATGGACTGATCGAGC TGTGGGGGATTACCTTGAAGAGAAACAACAACGAGACTGGCACCTCCGGGATAGATGCTGCTCTTTCAATCCGGTTCGATCCAGCAATGTGCCACGTCTC GCAAGTGAACCGATTGTCATGGAGAAGCAGCAAGAAATGCGATGACAACGGGGTGAGTGTCCAGCTGGCTTCCTGTGGAGCGGACCATTGTGTAAGGCTG TTTGAAGTCAAGGTTTGA
AA sequence Show only first row Show all	>Lus10007953 pacid=23162319 polypeptide=Lus10007953 locus=Lus10007953.g ID=Lus10007953.BGIv1.0 annot-version=v1.0 MTENIEAATVEVNSLFIAAGCNRIVNNVSWGASGLISFGSQNAVAIFCPKTARILTTLPGHKASVNCTQWIPSTKFAFKAKMLERHYLLSGDSEGVIILW EFSLVVRKWRLVMKLPQLHKKGVTCITGTMVSETDTIFASSSSDGSVNIWELIVPVISEGECNLSCFESLSVGSKPMVALSLAELPGSSEHLVLAMERIR SLDFSLPIRKEGESDCIMLVSASQDKGIRIWKMSLLGLSDGRRKEITLASYIEGPVIMAGSSSYQVSLESLLIGHEDWVYSVEWQPPSKDLNQPQCILSA SMDKTMMIWQPERRSGIWMNVVTVGELSHSALGFYGGHWSLDGQSILAHGYGGAFHMWRNVGVDGDNWMPQKVPSGHFAPVSDISWARRGQYILTVSHDQ TTRIFAPWKTEASSLDGPSSWHEIARPQVHGHDINCVAFIEGKRNQRYICGADEKVARVFEAPLSFLKTLSHADQQSALTEDLQVEVQILGANMSALGLS QKPIYQSAGQETPRANVSDGIDTLESVPDAVPAIFTEPPIEDQLAYHTLWPESHKLYGHGNELFSLCCDHEGELVASSCKAQSQSVAEIWLWQVGTWKAV GRLQSHTLTVTQMEFSHDDSMLLAVSRDRQFSVFGIKRTGDEISYQLLAKQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWTVDGCNKSPSTRLLATLP PFNSSVTAVAWFGIDRDRGHRLLAVGMENGLIELWGITLKRNNNETGTSGIDAALSIRFDPAMCHVSQVNRLSWRSSKKCDDNGVSVQLASCGADHCVRL FEVKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Lus10007953 [exp]	0	1
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Lus10013487 [exp]	1.0	0.8950
AT5G49560			Putative methyltransferase fam...		Lus10026017 [exp]	7.9	0.8409
AT3G61700			Plant protein 1589 of unknown ...		Lus10019011 [exp]	9.9	0.8776
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10008480 [exp]	11.2	0.8267
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10014802 [exp]	11.7	0.8022
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10026687 [exp]	12.2	0.8561
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10021059 [exp]	15.7	0.8516
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	19.1	0.8747
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020118 [exp]	20.9	0.8325
AT5G20600			unknown protein		Lus10011961 [exp]	23.2	0.8515

Compare expression of checked genes

Lus10007953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.