Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15140 124 / 1e-35 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034633 [exp] 135 / 2e-39 AT1G15140 316 / 3e-108 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Lus10035265 [exp] 133 / 2e-36 AT1G15130 836 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116500 [exp] 150 / 4e-45 AT1G15140 368 / 1e-128 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Potri.008G126700 [exp] 133 / 4e-39 AT1G15140 395 / 9e-140 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007954 pacid=23162281 polypeptide=Lus10007954 locus=Lus10007954.g ID=Lus10007954.BGIv1.0 annot-version=v1.0 ATGTCTGCAACTCTCTTCCTCCCCCTTCCAGCTCAATCTCCCGCCACCACCACCCATGCGCACCTTCGCCCAACTCCCCTCCTCCCCATGTCTATCCTAC GCCGCATCGCCCATCGCAATCTAACCTCCCCGCTCCTCCTCCACCGCCACCGCAGGCGTCTCGCCGCCGTCTCCGCCGCCGCCGTCCGCCAGGACACCGC GGCGTGGACTCAAGCCCCGCTATCCGAGATCGAGCCAGTCGCCGAGTCTCTATTCCACGTCAGCATCGATGTCTCCGATTACCCCGACCTCGCCGCATCC CACAAGCTCCCGGGGCAGTACCTCCAGCTGCGGATCCTAGAGACTGAGAAGCCGTCGTTCTTGGCCATCGCTTCACCTCCTTCCTTTGCCGCCTCGAAAG GCGCGTTCGAGTTTTTGGTCAAGAGCGTCCCCGCCTCCCCCGCCGACGCCTTGTCACCGCCGACGCCTTGTGCGCGTTGA
AA sequence Show only first row Show all	>Lus10007954 pacid=23162281 polypeptide=Lus10007954 locus=Lus10007954.g ID=Lus10007954.BGIv1.0 annot-version=v1.0 MSATLFLPLPAQSPATTTHAHLRPTPLLPMSILRRIAHRNLTSPLLLHRHRRRLAAVSAAAVRQDTAAWTQAPLSEIEPVAESLFHVSIDVSDYPDLAAS HKLPGQYLQLRILETEKPSFLAIASPPSFAASKGAFEFLVKSVPASPADALSPPTPCAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10007954 [exp]	0	1
AT1G34000		OHP2	one-helix protein 2 (.1)		Lus10000462 [exp]	2.2	0.9142
AT4G14450		ATBET12	unknown protein		Lus10022200 [exp]	3.9	0.8584
AT4G26860			Predicted pyridoxal phosphate-...		Lus10032558 [exp]	5.3	0.8979
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030837 [exp]	6.1	0.8289
AT4G38225			unknown protein		Lus10013843 [exp]	8.8	0.9002
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10006188 [exp]	8.9	0.9047
AT1G34000		OHP2	one-helix protein 2 (.1)		Lus10017779 [exp]	9.2	0.8504
AT5G19590			Protein of unknown function, D...		Lus10017733 [exp]	10.0	0.8428
AT3G60690			SAUR-like auxin-responsive pro...		Lus10009286 [exp]	11.7	0.8801
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10027847 [exp]	13.5	0.8420

Compare expression of checked genes

Lus10007954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.