Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15140 237 / 1e-79 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) AT1G20020 45 / 6e-06 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT5G17770 41 / 0.0001 CBR1, ATCBR NADH:cytochrome B5 reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013488 [exp] 280 / 5e-99 AT1G15140 244 / 1e-82 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Lus10035265 [exp] 215 / 4e-66 AT1G15130 836 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10034633 [exp] 187 / 5e-60 AT1G15140 316 / 3e-108 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Lus10014491 [exp] 41 / 0.0001 AT5G20080 475 / 1e-170 FAD/NAD(P)-binding oxidoreductase (.1) Lus10030059 [exp] 40 / 0.0002 AT5G20080 516 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Lus10005682 [exp] 40 / 0.0002 AT5G17770 474 / 6e-171 NADH:cytochrome B5 reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126700 [exp] 238 / 2e-80 AT1G15140 395 / 9e-140 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Potri.010G116500 [exp] 213 / 6e-70 AT1G15140 368 / 1e-128 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Potri.013G067300 [exp] 44 / 1e-05 AT5G17770 461 / 6e-166 NADH:cytochrome B5 reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007955 pacid=23162303 polypeptide=Lus10007955 locus=Lus10007955.g ID=Lus10007955.BGIv1.0 annot-version=v1.0 ATGGGGAAAGGATTCGGTATCAATCAAATCGATCCGCCTGTGAAGTACTCTACCGTTCTAATTTTTGCCACCGGCTCCGGAATCAGTCCAATTCGATCTC TAATTGAGACAGGGTTTAGTGCTGACCAAAGATCTGATGTGAGGCTTTACTATGGAGCTAGAAACCTTAAGAGGATGGCTTACCAGGATAGGTTCAAAGA ATGGGAGTCGTCTGGTGTTAAGATTATCCCAGTACTATCACAACCAGATGGTACCTGGAAGGGTGAAGCTGGCTATGTACAGACTGCTTTCGCTAGCGCC ACGCAGATATCCAGCCCAGCAGGCACAGGTGCTGTGCTTTGTGGGCAGAAACAGATGGCAGAGGAGGTGACATCGATTCTTTTAGCAGAGGGAGTCTCGA CAGAGAGAATACTGAAGAACTTCTGA
AA sequence Show only first row Show all	>Lus10007955 pacid=23162303 polypeptide=Lus10007955 locus=Lus10007955.g ID=Lus10007955.BGIv1.0 annot-version=v1.0 MGKGFGINQIDPPVKYSTVLIFATGSGISPIRSLIETGFSADQRSDVRLYYGARNLKRMAYQDRFKEWESSGVKIIPVLSQPDGTWKGEAGYVQTAFASA TQISSPAGTGAVLCGQKQMAEEVTSILLAEGVSTERILKNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10007955 [exp]	0	1
AT4G14500			Polyketide cyclase/dehydrase a...		Lus10041166 [exp]	2.8	0.8052
AT2G46910			Plastid-lipid associated prote...		Lus10036340 [exp]	4.2	0.8273
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Lus10023782 [exp]	11.6	0.8493
AT4G09620			Mitochondrial transcription te...		Lus10009420 [exp]	17.0	0.7686
					Lus10027957 [exp]	19.8	0.7924
AT4G28660		PSB28	photosystem II reaction center...		Lus10024959 [exp]	19.9	0.8159
AT5G48545		HINT3	histidine triad nucleotide-bin...		Lus10025883 [exp]	25.4	0.7454
AT1G56300			Chaperone DnaJ-domain superfam...		Lus10020685 [exp]	26.8	0.6788
AT4G14500			Polyketide cyclase/dehydrase a...		Lus10021883 [exp]	31.6	0.7753
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10027621 [exp]	32.2	0.7298

Compare expression of checked genes

Lus10007955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.