Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52690 66 / 3e-14 LEA7 LATE EMBRYOGENESIS ABUNDANT 7, Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2) AT3G15670 50 / 8e-08 Late embryogenesis abundant protein (LEA) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013489 [exp] 177 / 5e-58 AT1G52690 82 / 3e-20 LATE EMBRYOGENESIS ABUNDANT 7, Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G173200 [exp] 83 / 7e-21 AT1G52690 58 / 2e-11 LATE EMBRYOGENESIS ABUNDANT 7, Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02987 [flax] [poplar] LEA_4 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10007956 pacid=23162318 polypeptide=Lus10007956 locus=Lus10007956.g ID=Lus10007956.BGIv1.0 annot-version=v1.0 ATGTCGTCTCAGGATCAGTACTACAGAGCCGGCAAGGCTGAAGGCCGAGCTGAGGAGAAGACAGGGCAGGCGACTGATGCGATGAAGGACAAGGCGACAG CGGCGAAGGAGATGGCCGGAGCTAAGACCCAGGAGGCAAAGGAGAGGGCCTCACAGGCGGCAGGTGCTACCCGGGATAAGACGTACCAGGCGGCAGATAC TACTCGGGAGAAGGCGGGGCAGGCGGCGGATGTTACTAGGGAGAAGGCGTACCAAGGAAAAGAGCAGACGAAAGGTGCGGTGCAGAGTGCAGGGGAGAAG GTGAAGCAGATGGCAGAGAGCGCCGCTGGTACTGTCAAGCATACCCTCGGAATGGGCGGCGGCGACCGCGACCCAGTGGAGGATGATATCCCTTATGCCG GCGGGGATAAGACTGCCAAAACCACCACCACTACCCACAGGGAGACCAAGTATTAG
AA sequence Show only first row Show all	>Lus10007956 pacid=23162318 polypeptide=Lus10007956 locus=Lus10007956.g ID=Lus10007956.BGIv1.0 annot-version=v1.0 MSSQDQYYRAGKAEGRAEEKTGQATDAMKDKATAAKEMAGAKTQEAKERASQAAGATRDKTYQAADTTREKAGQAADVTREKAYQGKEQTKGAVQSAGEK VKQMAESAAGTVKHTLGMGGGDRDPVEDDIPYAGGDKTAKTTTTTHRETKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52690		LEA7	LATE EMBRYOGENESIS ABUNDANT 7,...		Lus10007956 [exp]	0	1
AT1G54540			Late embryogenesis abundant (L...		Lus10031317 [exp]	18.8	0.7991
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10036575 [exp]	26.7	0.7947
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023184 [exp]	31.9	0.7804
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10015083 [exp]	32.6	0.7662
AT1G03700			Uncharacterised protein family...		Lus10011179 [exp]	44.0	0.7950
AT4G02090			unknown protein		Lus10010014 [exp]	44.7	0.7693
AT2G18540			RmlC-like cupins superfamily p...		Lus10037937 [exp]	45.9	0.6762
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10038536 [exp]	46.2	0.7830
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10019711 [exp]	57.4	0.7749
AT1G61930			Protein of unknown function, D...		Lus10002073 [exp]	60.8	0.7501

Compare expression of checked genes

Lus10007956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.