Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04240 46 / 6e-05 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003576 [exp] 47 / 2e-05 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 46 / 7e-05 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 46 / 7e-05 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116200 [exp] 615 / 0 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007957 pacid=23162331 polypeptide=Lus10007957 locus=Lus10007957.g ID=Lus10007957.BGIv1.0 annot-version=v1.0 ATGGGAAGCGGAAACCCAATCAGAACTGATGCAGTAGAAGAAGATAGATGGGATAGAGTTAGAGCAGCTGTGGATGATCTATATACAATCGTCGATACTT ACTTCCCTCCAAACCCAGATGACAAGCTTTCCAAACTTCAAGCTCCGTCTGATGCCTGTCTCTCCCTGCTCGATTCCATCCCTCAAGAGCAAAGGAGATC TTCTTCGCAACGTGCATTGTATGAATATTTGAGAGGGAAGGCATTGGATGTGTTTCCGAACTATAGGAAGGAAGCTGAGGATCATCTCTCGAAAGCGGTG AAGTTAAATCCTTCCCTGGCAGATGCTTGGCTGTGTCTGGGTAACACCATTTGGAAGAAAGGAGATCTCACATCCGCTAAGAATTGCTTCAATCTCGCTC TAAGCAAGGGCCCGAACAAGAAGATACTTTGTCTGTTATCAATGCTGGAAAGGAAAATGGCTCAAGGTGCTGAAAATCAGGCAGAAATGGTTGATGAAAG CATTCAGCATGCCAAAGATGCAATTGCCTTGGATGTCAAGGATGGGAATTCTTGGTACAACCTTGGAAATGCTTACCTCACTAGTTTCTTCATCACTGGA GCATGGGAACACAACAAGCTCCGACAAGCCTTAAAGGCTTATCAGATTGCTGAGAAGGATGAAAGGACACAATCTAATCCGGACTTGTTTTTCAATTGTG CCACTGTAAATAAATATCTGGAGAATTATGAAAGGGCCCTCAGTGGATTTGAAGCTGCTGCATTGAAGGACCCTAGCCTCGAAGCTGATGGTGAAGTTCA GAAGATGGTTAATCTTCTTGACAGAATCCAAAGCTTGCTCAAAGGAAATGCTAGAGCCAAAAGACCCGGATCTTCGGCACCATTTATAACTGCTGCTGAT TTAAAAGCACCGTATAAAGATGCCACCATCGATGTGCTAGCACCCGGGTTGAACAAATCAGCTATGGTTTCTGGGAAAGTTATTTTCTTTGTTAAGAATG ACGATGCCACTCCCCTCTACTATGTGGTCTGCGATTCTAATCAGGCTTCCTTTGTGCTGTCAGTGTACGGAGTCCGCAATGAAGCTATAAAAGAAGGCGA TCGGATTGCATTGCTCGAACCTTATTACCACCATCTAGATTTTTCCTGGAAGGCCAAGCATTACAATTTCAAGTCCATCCGGGTGGATTTCGCCGAGCAA GTTGTGGTGAACGGGAAGCCTCTACCTGCTCATCATGCCATTAGTTCATCGATCTATGCACAGCATAAACCGTGA
AA sequence Show only first row Show all	>Lus10007957 pacid=23162331 polypeptide=Lus10007957 locus=Lus10007957.g ID=Lus10007957.BGIv1.0 annot-version=v1.0 MGSGNPIRTDAVEEDRWDRVRAAVDDLYTIVDTYFPPNPDDKLSKLQAPSDACLSLLDSIPQEQRRSSSQRALYEYLRGKALDVFPNYRKEAEDHLSKAV KLNPSLADAWLCLGNTIWKKGDLTSAKNCFNLALSKGPNKKILCLLSMLERKMAQGAENQAEMVDESIQHAKDAIALDVKDGNSWYNLGNAYLTSFFITG AWEHNKLRQALKAYQIAEKDERTQSNPDLFFNCATVNKYLENYERALSGFEAAALKDPSLEADGEVQKMVNLLDRIQSLLKGNARAKRPGSSAPFITAAD LKAPYKDATIDVLAPGLNKSAMVSGKVIFFVKNDDATPLYYVVCDSNQASFVLSVYGVRNEAIKEGDRIALLEPYYHHLDFSWKAKHYNFKSIRVDFAEQ VVVNGKPLPAHHAISSSIYAQHKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10007957 [exp]	0	1
AT3G48860			unknown protein		Lus10043194 [exp]	2.0	0.8464
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10024522 [exp]	3.9	0.8419
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000817 [exp]	5.0	0.8348
AT3G46220			unknown protein		Lus10004920 [exp]	6.9	0.8308
AT1G11060			WAPL (Wings apart-like protein...		Lus10005857 [exp]	9.5	0.8266
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10002704 [exp]	9.6	0.8388
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Lus10028786 [exp]	13.0	0.8230
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	13.5	0.8232
AT5G66180			S-adenosyl-L-methionine-depend...		Lus10028444 [exp]	14.0	0.8179
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	15.9	0.8242

Compare expression of checked genes

Lus10007957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.