Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50920 266 / 5e-83 Nucleolar GTP-binding protein (.1) AT1G10300 234 / 4e-71 Nucleolar GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002558 [exp] 350 / 2e-115 AT1G50920 1039 / 0.0 Nucleolar GTP-binding protein (.1) Lus10027370 [exp] 337 / 2e-110 AT1G50920 1034 / 0.0 Nucleolar GTP-binding protein (.1) Lus10038748 [exp] 319 / 9e-104 AT1G50920 940 / 0.0 Nucleolar GTP-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258900 [exp] 308 / 2e-99 AT1G50920 999 / 0.0 Nucleolar GTP-binding protein (.1) Potri.009G054000 [exp] 308 / 2e-99 AT1G50920 1048 / 0.0 Nucleolar GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08155 [flax] [poplar] NOGCT NOGCT (NUC087) domain
Representative CDS sequence Show only first row Show all	>Lus10007958 pacid=23162302 polypeptide=Lus10007958 locus=Lus10007958.g ID=Lus10007958.BGIv1.0 annot-version=v1.0 ATGGATATGAAAGATGAAGCATTGAAGACTCTTGTTGGCCAGAAAGGAGTAGATGATGATTCCGATTCCGATAACTCGGGTTTGGTTTTGATGACAATGA GCACTCTGACTGAGGAAGGGGTGATGGCTGTAAAGAATTCAGCTTGTGAAAGGTTGCTGGATCAGAGGGTGGAACTGAAGATGAAGTCGAAGAAGATGAA GGATTGTCTGAATCGGTTCCATGTGGCTATGCCTAGCCCTCGCGACCAGATTGAAAGACCGGCTTTTATTCCGCAGCAACCATTACTTTCAAAGAAACAA GCTTTGAGGAAAACCGAAAAGGATTTGGAAGAGGAGAACGGCGGAGTTGGTCTGTATTCTGTCAGTTTGAAGAAGCACCACATTTTGGCAAACGACGAAT GGAAGGAAGATATACTGCCCGAGTTCCTTGATGGCCACAATGTGTCCGACTTCATCGATCCTGAGATCTTGCTCAAGCTCGAGGAGCTGGAACGTGAGGA AGACGACGGGAAGGAGGAGGAGGAGTTTGAAATGGACCTGGAAGAGTTTACACCACAACAGAAGGAAGCTGATGCAAAGGCCTTGCGTGCTCGGGAGCGT AATAGGACAAAGAAGAGCACTAGGCCTAGTGTTCCTCGAAAATTTGACAAGGATAGGAAGTTCACGTCTCAGAGAATGGGCAGAGAGCTATCAAGTTCGG GGATTGATCCTTCTCGAGCGATAGAGCGCTCTCGTAGCAGGTCTGTAGGTCGCAAAAGAGAGAGGTCAGTTGGTGCGGATGATGCTATTATGGACACTTG TGATGGTGTTTCTAACAAGAAGAAGCTGTGGTTAAGATCGAGATCAAGATCAAGCTCGAGAATGAGTCCCATCACTGATGTTGTTCCTGGAGATGGATAC AAGGACTCCGCTCAGAAGAGCAAGGCGATTACGATTGCAAGGAATGCTGTCAAGAAGAGGAACAAGAATGGGCTGATAGAGTCATCCCAACTCTCAGGCC TAAGCATCTCTTCTCCGGAAAACGAGGGATGGGGAAAACTGATAGACGCTGAAGATCAAAGCTCATCGATCGTCGGAAGGAAAGATATTGATTAA
AA sequence Show only first row Show all	>Lus10007958 pacid=23162302 polypeptide=Lus10007958 locus=Lus10007958.g ID=Lus10007958.BGIv1.0 annot-version=v1.0 MDMKDEALKTLVGQKGVDDDSDSDNSGLVLMTMSTLTEEGVMAVKNSACERLLDQRVELKMKSKKMKDCLNRFHVAMPSPRDQIERPAFIPQQPLLSKKQ ALRKTEKDLEEENGGVGLYSVSLKKHHILANDEWKEDILPEFLDGHNVSDFIDPEILLKLEELEREEDDGKEEEEFEMDLEEFTPQQKEADAKALRARER NRTKKSTRPSVPRKFDKDRKFTSQRMGRELSSSGIDPSRAIERSRSRSVGRKRERSVGADDAIMDTCDGVSNKKKLWLRSRSRSSSRMSPITDVVPGDGY KDSAQKSKAITIARNAVKKRNKNGLIESSQLSGLSISSPENEGWGKLIDAEDQSSSIVGRKDID

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007958 [exp]	0	1
					Lus10007072 [exp]	9.2	0.6264
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030287 [exp]	11.5	0.6868
AT1G12150			Plant protein of unknown funct...		Lus10039107 [exp]	12.7	0.7102
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007959 [exp]	13.5	0.6241
AT5G08450			unknown protein		Lus10004298 [exp]	14.0	0.6704
AT1G56290			CwfJ-like family protein (.1)		Lus10008172 [exp]	15.2	0.6960
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10011105 [exp]	18.8	0.6689
AT2G26850			F-box family protein (.1)		Lus10036444 [exp]	19.2	0.6332
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	21.3	0.6449
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10035919 [exp]	27.9	0.5534

Compare expression of checked genes

Lus10007958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.