Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50920 496 / 2e-173 Nucleolar GTP-binding protein (.1) AT1G10300 449 / 4e-155 Nucleolar GTP-binding protein (.1) AT1G80770 124 / 7e-33 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G23860 72 / 1e-14 GTP-binding protein-related (.1) AT1G17470 49 / 3e-06 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT1G72660 49 / 3e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G39520 48 / 4e-06 GTP-binding protein-related (.1) AT5G66470 45 / 3e-05 RNA binding;GTP binding (.1) AT1G07615 44 / 6e-05 GTP-binding protein Obg/CgtA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002558 [exp] 521 / 0 AT1G50920 1039 / 0.0 Nucleolar GTP-binding protein (.1) Lus10027370 [exp] 515 / 0 AT1G50920 1034 / 0.0 Nucleolar GTP-binding protein (.1) Lus10038748 [exp] 506 / 9e-178 AT1G50920 940 / 0.0 Nucleolar GTP-binding protein (.1) Lus10039110 [exp] 453 / 7e-162 AT1G50920 489 / 1e-170 Nucleolar GTP-binding protein (.1) Lus10019508 [exp] 124 / 2e-31 AT1G80770 560 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043354 [exp] 122 / 7e-31 AT1G80770 550 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015662 [exp] 49 / 3e-06 AT1G72660 760 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10037676 [exp] 49 / 3e-06 AT1G72660 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10005800 [exp] 47 / 1e-05 AT4G39520 682 / 0.0 GTP-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258900 [exp] 514 / 0 AT1G50920 999 / 0.0 Nucleolar GTP-binding protein (.1) Potri.009G054000 [exp] 513 / 2e-180 AT1G50920 1048 / 0.0 Nucleolar GTP-binding protein (.1) Potri.002G134900 [exp] 126 / 4e-33 AT1G80770 576 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G080900 [exp] 48 / 3e-06 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.001G239600 [exp] 48 / 5e-06 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.001G170300 [exp] 48 / 6e-06 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G063500 [exp] 47 / 6e-06 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02421 [flax] [poplar] FeoB_N Ferrous iron transport protein B CL0023 [flax] [poplar] P-loop_NTPase PF06858 [flax] [poplar] NOG1 Nucleolar GTP-binding protein 1 (NOG1)
Representative CDS sequence Show only first row Show all	>Lus10007959 pacid=23162288 polypeptide=Lus10007959 locus=Lus10007959.g ID=Lus10007959.BGIv1.0 annot-version=v1.0 ATGGTTGAGTACAATTTCAAGAACATAAAGCCGGTCCCCAGTCGGAAGGATTTCATTGACATCATCCTCTCTCCAACCCAAAGGCACACCCCTACAGTTA TCCACAAAGGATACCGGACCAGCATCATTCGCCAGTTCTACATGCGCAAGGTGAAGTTCTCCCAGAACAACTTCCACGATAAGCTCTCTACAATCATCGA CGACTTCCCTCGTTTGGACGACATCCATCCTTTCTACGGTGACCTTCTTCACGTTCTCTGCGACAAACATCATTACAAGATTGCTCTCGCCCAGATAAAT ACTGCCAGGAATCTCATCAGCAAGATAGCCAAGGAATATCTGAGGATGTTGAAGTACTGCGACTCTTTATACAGGTCCAAATCCTTGAAGGTTGCTGCAC TTGGCCGAATGTGTACTGCAATCAAAAGGGTTGGACCTAGTTTGGCTTATCTGGAAGAGGTCAGGCAGCACATGTCTAGGATTCCTTGTATCGATCCGAA TAACCGTACCATCTTGATTTGCGGGTATCCGAATGTAGGGAAGAGCTCCTTCATGAACAACATCACTAGGGCTGTTTTCGACGTCCAGCGCTATGCTTTC ACTACCAGGTCTCTCTTCGTCGGGCACACCGAATACAAGTACTTGAGGTATCAGGTGACCGACACGCCTGGAATCTTGGACAGGCCGTCTGAAGATCGTA ACACCATCGAGATGTGCAGCATTACGGCTCTGGCTCATTTGCGAGCTGCTGTTTTCTTCTTCCTGGACCTCTCTGGCTCGTGTGGCTACACAGTTTCCCA ACAGGCAGCTTTGTTTCATAGCATCAAAGCATTGTTCATGAACAAGCCTTTGACCATCGTCTGTAACAAAGCTGATTTGCAGACCCTCCAAGGGAAGCGA GGAAGATAG
AA sequence Show only first row Show all	>Lus10007959 pacid=23162288 polypeptide=Lus10007959 locus=Lus10007959.g ID=Lus10007959.BGIv1.0 annot-version=v1.0 MVEYNFKNIKPVPSRKDFIDIILSPTQRHTPTVIHKGYRTSIIRQFYMRKVKFSQNNFHDKLSTIIDDFPRLDDIHPFYGDLLHVLCDKHHYKIALAQIN TARNLISKIAKEYLRMLKYCDSLYRSKSLKVAALGRMCTAIKRVGPSLAYLEEVRQHMSRIPCIDPNNRTILICGYPNVGKSSFMNNITRAVFDVQRYAF TTRSLFVGHTEYKYLRYQVTDTPGILDRPSEDRNTIEMCSITALAHLRAAVFFFLDLSGSCGYTVSQQAALFHSIKALFMNKPLTIVCNKADLQTLQGKR GR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007959 [exp]	0	1
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007958 [exp]	13.5	0.6241
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10015222 [exp]	22.1	0.5767
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10001666 [exp]	31.2	0.5955
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10028001 [exp]	36.5	0.6383
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	40.2	0.6203
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	90.7	0.5681
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013582 [exp]	91.3	0.6023
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	97.4	0.5725
					Lus10007072 [exp]	111.8	0.5532
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	128.1	0.5585

Compare expression of checked genes

Lus10007959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.