Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03280 101 / 3e-27 unknown protein AT5G17350 91 / 5e-23 unknown protein AT4G37240 50 / 9e-08 unknown protein AT2G23690 48 / 5e-07 unknown protein AT1G76600 46 / 5e-06 unknown protein AT5G66580 45 / 5e-06 unknown protein AT5G12340 44 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013490 [exp] 273 / 1e-94 AT3G03280 110 / 6e-31 unknown protein Lus10035268 [exp] 220 / 2e-73 AT5G17350 116 / 4e-33 unknown protein Lus10034636 [exp] 147 / 2e-45 AT5G17350 92 / 5e-24 unknown protein Lus10017620 [exp] 73 / 3e-16 AT5G17350 83 / 2e-20 unknown protein Lus10010014 [exp] 57 / 1e-09 AT4G02090 127 / 2e-36 unknown protein Lus10019659 [exp] 45 / 2e-06 AT5G66580 141 / 4e-44 unknown protein Lus10012442 [exp] 45 / 6e-06 AT1G76600 152 / 2e-46 unknown protein Lus10016785 [exp] 42 / 7e-05 AT2G23690 138 / 4e-42 unknown protein Lus10000739 [exp] 40 / 0.0001 AT5G66580 105 / 6e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116000 [exp] 209 / 2e-69 AT3G03280 131 / 4e-39 unknown protein Potri.008G127200 [exp] 207 / 2e-68 AT3G03280 127 / 2e-37 unknown protein Potri.004G094000 [exp] 139 / 6e-42 AT3G03280 143 / 1e-43 unknown protein Potri.017G121200 [exp] 132 / 4e-39 AT3G03280 145 / 7e-45 unknown protein Potri.012G045600 [exp] 66 / 8e-14 AT1G18290 129 / 1e-38 unknown protein Potri.015G036800 [exp] 64 / 8e-13 AT1G18290 122 / 1e-35 unknown protein Potri.004G149800 [exp] 63 / 1e-12 AT5G66580 91 / 7e-24 unknown protein Potri.006G105600 [exp] 62 / 3e-12 AT3G03280 63 / 9e-13 unknown protein Potri.006G105500 [exp] 61 / 7e-12 AT3G03280 65 / 2e-13 unknown protein Potri.002G196900 [exp] 57 / 6e-10 AT4G02090 92 / 3e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007960 pacid=23162286 polypeptide=Lus10007960 locus=Lus10007960.g ID=Lus10007960.BGIv1.0 annot-version=v1.0 ATGGGAAACTACGTGTCCTGCACACTGGCGACTCCGCTGATCAAGTCCGGCAAGGCGGCGAGGGTGGTGTTCCCCGGCGGCGAGGTGAGGCAATTTAGGG ATCAGACGATCAAGGCGGCGGAGATCATGTTCGATTGCCCCAATTTCTTCCTCTGTAACTCCCAGTCGCTCCACATCGGCCGCAGATTCTCTCCTCTCTC GGCCGATGAGGAGCTGGAGCTAGGAAACGTCTACCTAATGTTCCCGGTCAAGCGGGCTAGCTCGATTGTGTCGGCTGCTGACATGGCGGTGTTCTTTCTC GCGGCCAATTCCGCCGCCAAACGGATTGCCGGCGGGAAAGGAGGAGGAGGTGGTGGTGATGGGAATGAGGGATCGGAACAGGAAATGAGCGGCGGAGGGG TGAAGAGGTTGGAGGAGACGGCGGAGGAGATGGAGATTCCGGCGGAGTATAAGTACAGGATGTCGGTTTGCCGGTCGAGGAAGCCGATGTTGGAGACGAT GAAAATAACTCATTATTTGAAACTCATTATATCATATATATATATATATATAATTCGTCACGTCTTAACAATTCGGTTCGTGAAGTGGTATATGATATAT ATATAG
AA sequence Show only first row Show all	>Lus10007960 pacid=23162286 polypeptide=Lus10007960 locus=Lus10007960.g ID=Lus10007960.BGIv1.0 annot-version=v1.0 MGNYVSCTLATPLIKSGKAARVVFPGGEVRQFRDQTIKAAEIMFDCPNFFLCNSQSLHIGRRFSPLSADEELELGNVYLMFPVKRASSIVSAADMAVFFL AANSAAKRIAGGKGGGGGGDGNEGSEQEMSGGGVKRLEETAEEMEIPAEYKYRMSVCRSRKPMLETMKITHYLKLIISYIYIYIIRHVLTIRFVKWYMIY I

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03280			unknown protein		Lus10007960 [exp]	0	1
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	1.4	0.9681
AT5G38700			unknown protein		Lus10002433 [exp]	2.8	0.9593
AT2G42760			unknown protein		Lus10029248 [exp]	3.7	0.9458
AT3G03280			unknown protein		Lus10013490 [exp]	4.2	0.9533
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10001871 [exp]	4.5	0.9480
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10006332 [exp]	4.9	0.9461
					Lus10039474 [exp]	5.2	0.9445
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Lus10042798 [exp]	5.5	0.9370
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10006334 [exp]	6.3	0.9455
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10021267 [exp]	8.5	0.9486

Compare expression of checked genes

Lus10007960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.