Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13240 250 / 3e-82 transcription regulators (.1) AT2G01275 88 / 1e-19 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 57 / 3e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G47550 51 / 4e-07 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 45 / 4e-05 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 42 / 0.0003 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013491 [exp] 396 / 2e-135 AT5G13240 299 / 1e-99 transcription regulators (.1) Lus10035271 [exp] 134 / 6e-37 AT2G01275 240 / 2e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10034640 [exp] 134 / 2e-36 AT2G01275 202 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10034638 [exp] 125 / 3e-35 AT5G13240 110 / 4e-31 transcription regulators (.1) Lus10004058 [exp] 82 / 2e-17 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 56 / 1e-08 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10030472 [exp] 50 / 9e-07 AT2G02960 221 / 4e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10021670 [exp] 46 / 2e-05 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10035010 [exp] 46 / 3e-05 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G115800 [exp] 270 / 2e-90 AT5G13240 335 / 4e-118 transcription regulators (.1) Potri.008G127400 [exp] 115 / 9e-30 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 114 / 2e-29 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.004G093500 [exp] 79 / 1e-16 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 77 / 3e-16 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G086300 [exp] 54 / 3e-08 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.010G169200 [exp] 53 / 1e-07 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.019G111700 [exp] 45 / 2e-05 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.013G126600 [exp] 43 / 0.0001 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09174 [flax] [poplar] Maf1 Maf1 regulator
Representative CDS sequence Show only first row Show all	>Lus10007961 pacid=23162276 polypeptide=Lus10007961 locus=Lus10007961.g ID=Lus10007961.BGIv1.0 annot-version=v1.0 ATGGGGGATCATTTCGTGGTGTTGGTGGACTGGCTGATAACCGAATCGACGCTTGAAGCAGCAATCGAAAGCCGGATTCGGTCTATGCAAGCCGCTGCAT CATCGGGCGTGGATGATTCCTGTGATGGTGATCTTGATCTGGAAGTTGAGGAGAAATCCTGCCAGAATGCGGATTCTTTTGATGACGTGTCAACTACTCC CAGGAAGATTGTGGAATGCAGGATATGTCAGGATGAAGATTTTGATTCCAACATGGAGACTCCTTGTTCTTGCTGTGGCAGCCTCAAGTTGTTGTTCTTA CGAGTTTCCGGGATCGTTCTTCCGATCTACGTTCTGGTTAAATCATTGACTGTTCTCCAGCAACTTCGCGAACAACAACACCAGCAAATGCAGGAGATCC CTTCATCAGACGAAGATCCTGACGAGGAGGATCAATCGGCCCTGCAGCTCGAGTCGCATAAACTGATCCGCAGCGATATCATGAAGTTCTTAGAGTACAC TCCGCTTGAACGGATTGACGATTTCCTTAACCATTTGAATCTTGGGGAGTCCACGATTAAAGGTTCCCTTGAGGCTTACTCTTGCAAGCACGCTGGATCT GACAAAAAGCTCTCCTTCAGCTTGGAGAATGAGATTCTTGATTACCTTGGGAAATCGTCTGATACTGATTCCTCCTCGCCTCCTGAATACCTGTTGAGCA GATCCAGGTGCGCCATGAAAGCTCATCAGTTCTTCACAAAGGAAACCTGGGAGACATTTAAGCAGTTCTTTGATATCCACATGATGGGAGCATCAAAGGA ATGGAAGGAGGGAGGTGGAGATACTTCCTTGCTGGAAACAATATACAGAGCTTTAGATGAGGTTGTAAATCTGTCCGAGTGCGAAATCTACAGCTACGAT CCGGACTCCGACGTGAACCCGTTTCTGGAGAGGGGTGCAATCTGGTCGATCAGCTTCTTCTTCTACAACAAGAAGCTAAAGCGGGTCGTAAGCTTCTGTT GCTGCTGCGTAAGCAACTTGATTGGCATCGATGCCTTGAGTAACAGCGACGACGATGGAGAAATATTCGATGACATGGACATGTAA
AA sequence Show only first row Show all	>Lus10007961 pacid=23162276 polypeptide=Lus10007961 locus=Lus10007961.g ID=Lus10007961.BGIv1.0 annot-version=v1.0 MGDHFVVLVDWLITESTLEAAIESRIRSMQAAASSGVDDSCDGDLDLEVEEKSCQNADSFDDVSTTPRKIVECRICQDEDFDSNMETPCSCCGSLKLLFL RVSGIVLPIYVLVKSLTVLQQLREQQHQQMQEIPSSDEDPDEEDQSALQLESHKLIRSDIMKFLEYTPLERIDDFLNHLNLGESTIKGSLEAYSCKHAGS DKKLSFSLENEILDYLGKSSDTDSSSPPEYLLSRSRCAMKAHQFFTKETWETFKQFFDIHMMGASKEWKEGGGDTSLLETIYRALDEVVNLSECEIYSYD PDSDVNPFLERGAIWSISFFFYNKKLKRVVSFCCCCVSNLIGIDALSNSDDDGEIFDDMDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13240			transcription regulators (.1)		Lus10007961 [exp]	0	1
AT1G15860			Domain of unknown function (DU...		Lus10026216 [exp]	2.4	0.9186
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	3.5	0.9213
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	3.6	0.9273
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10009155 [exp]	4.2	0.9155
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	4.6	0.9150
AT1G73350			unknown protein		Lus10031897 [exp]	5.0	0.9160
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10016885 [exp]	5.7	0.9183
AT5G19960			RNA-binding (RRM/RBD/RNP motif...		Lus10017757 [exp]	7.5	0.8942
AT1G50440			RING/FYVE/PHD zinc finger supe...		Lus10033381 [exp]	8.0	0.9016
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10016956 [exp]	10.4	0.8809

Compare expression of checked genes

Lus10007961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.