Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71110 546 / 0 unknown protein AT2G25270 333 / 4e-108 unknown protein AT2G12400 323 / 2e-104 unknown protein AT1G80540 266 / 2e-82 unknown protein AT5G67550 71 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013492 [exp] 910 / 0 AT1G71110 645 / 0.0 unknown protein Lus10035272 [exp] 590 / 0 AT1G71110 503 / 2e-174 unknown protein Lus10034641 [exp] 582 / 0 AT1G71110 587 / 0.0 unknown protein Lus10001945 [exp] 351 / 6e-115 AT2G25270 650 / 0.0 unknown protein Lus10008028 [exp] 342 / 1e-111 AT2G12400 641 / 0.0 unknown protein Lus10008813 [exp] 332 / 8e-108 AT2G12400 616 / 0.0 unknown protein Lus10038102 [exp] 274 / 8e-86 AT2G25270 468 / 5e-161 unknown protein Lus10014341 [exp] 219 / 5e-65 AT2G25270 352 / 7e-116 unknown protein Lus10001929 [exp] 214 / 2e-62 AT2G25270 457 / 3e-156 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G115500 [exp] 629 / 0 AT1G71110 646 / 0.0 unknown protein Potri.018G023200 [exp] 351 / 4e-115 AT2G25270 595 / 0.0 unknown protein Potri.018G120200 [exp] 350 / 1e-114 AT2G12400 596 / 0.0 unknown protein Potri.006G060600 [exp] 345 / 9e-113 AT2G12400 579 / 0.0 unknown protein Potri.006G258700 [exp] 340 / 5e-111 AT2G25270 590 / 0.0 unknown protein Potri.007G132601 [exp] 132 / 3e-33 AT5G67550 189 / 8e-54 unknown protein Potri.017G023400 [exp] 130 / 2e-32 AT5G67550 182 / 3e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007962 pacid=23162284 polypeptide=Lus10007962 locus=Lus10007962.g ID=Lus10007962.BGIv1.0 annot-version=v1.0 ATGGCGAGATTCCGATGGTTTTGGATCATGTGGGTTGCTGCTGCTTGCTTCATTTCAGCCCAGAGCGAACACACAGTCACAGGCAGCTCCTCCAAGCTTT TGTTAGGGCAAGTGAATTTGGGATCATGGAGGAATGGGATATCTGAAGCTGCTACTATTACTACTGCAGAAGCACCTGAGCCGTCTAGCTATACTACTCT TGTGTTGGCTGCTGATAGGACTAATCGCCCTGATATACTTCACCGGTTTAAGCACTATACAGGAGGTTGGGATATCACCAATCGCCATTACTGGGCTTCT GTTGGATTTACTGGTGCTTCCGGTTTTGTGTTGGCCATCTTGTGGCTCTTCTCTTTTCCTATTGCTGTTGCAGTCCACCATTGGTGTGGATGGAAAGTGA AGATTCAAGACAAAGGGCTGAGAGCTCAAAGGATATGCCTCATATTGCTGATAGTGTTCACATGTTCTGCAGCGATCGGGTGCATTCTTCTTTCAGTCGG CCAGGGCGAGTTCAACGGAGAAGCGAAGAACACTTTGAGATACGTCGTAAACCAATCGGATTACACGGTTCAAACCTTGAGAAACGTGACCGAATATCTC TCCCTCGCCAAGACCATGAAAGTGGCTCAAGTTCTTCTCCCCCCTAACGCCATGGATGACATCGACAAGCTGAACGTGGATCTGAATGCTGCAGCGAACA CGCTCGAGGAGAAGACCAGCGAGAATTCCGAAAAGATAGCCACAGTGTTCACTGCAGTCCGTTCTGCGCTGATTGCTGTTGCTGCAGTAATGCTTGTCCT GGCTGTGGTTGGTTTTGGTGCGTATCGGAAACGATTACTTTCTGACACGTGTACATCCATGGATGAATGGGTTCAGAATCCTCAGGCAGCATCAGCACTT AGCAACATCCTCCCCTGTGTCGACCAGCGCACCACGAACAAGACGCTCATCCAAAGTAAAGAAGTCATCAACGACATCGTGACCATGGTCAACACGTACA TATACACCTTCGCGAATGCAAACCCGTCCCCTGCTGAAGTATTTAACTACTACAACCAGTCCGGACCGCTGATGACTCCGATTTGCTTACCGTTCGACTC GCAGCTTCACGATCGACGGTGCGCTTCCCAAGAAGCATCCTTGGCAAATGCCTCCATGGTATGGGAAAGCTATGTATGCCAAGTTTCATCATCTGGATAC TGCACAACTGTTGGAAGAATCAAACCTGATGTTTACAGCCAGTTGGTAGCAGCGGTTAACGAGACCTACGCGCTCGAGTACTACACTCCGGTCTTGCTCA GCCTCCAGGACTGCAAATTCGTCAGAGACACGTTCAAAGAAATCACCTCGAAATACTGCCCCCCGTTGGAGCGTTACCTCCAGCTCATAAATGCGGGACT GGGATTGATCTCGGTCGGAGTTCTGCTGTGTCTGGTTCTCTGGATACTCTATGCAAACCGCCCCCAAAGGGAGGAAGCGTTTGCCAAGAACAAGAACACC GAGAGTACTCCTCGTCATCCTCGGAACGACTCCGAGGATAGCATGGAAATACAGGTTGTTAGATAG
AA sequence Show only first row Show all	>Lus10007962 pacid=23162284 polypeptide=Lus10007962 locus=Lus10007962.g ID=Lus10007962.BGIv1.0 annot-version=v1.0 MARFRWFWIMWVAAACFISAQSEHTVTGSSSKLLLGQVNLGSWRNGISEAATITTAEAPEPSSYTTLVLAADRTNRPDILHRFKHYTGGWDITNRHYWAS VGFTGASGFVLAILWLFSFPIAVAVHHWCGWKVKIQDKGLRAQRICLILLIVFTCSAAIGCILLSVGQGEFNGEAKNTLRYVVNQSDYTVQTLRNVTEYL SLAKTMKVAQVLLPPNAMDDIDKLNVDLNAAANTLEEKTSENSEKIATVFTAVRSALIAVAAVMLVLAVVGFGAYRKRLLSDTCTSMDEWVQNPQAASAL SNILPCVDQRTTNKTLIQSKEVINDIVTMVNTYIYTFANANPSPAEVFNYYNQSGPLMTPICLPFDSQLHDRRCASQEASLANASMVWESYVCQVSSSGY CTTVGRIKPDVYSQLVAAVNETYALEYYTPVLLSLQDCKFVRDTFKEITSKYCPPLERYLQLINAGLGLISVGVLLCLVLWILYANRPQREEAFAKNKNT ESTPRHPRNDSEDSMEIQVVR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71110			unknown protein		Lus10007962 [exp]	0	1
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10024820 [exp]	2.2	0.8582
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10034940 [exp]	3.5	0.8501
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Lus10032297 [exp]	5.3	0.8279
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040286 [exp]	6.0	0.8255
					Lus10026168 [exp]	7.6	0.7996
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10007126 [exp]	10.5	0.8294
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10040903 [exp]	11.0	0.8250
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Lus10021283 [exp]	11.2	0.8214
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10001183 [exp]	15.6	0.8177
AT3G55420			unknown protein		Lus10040295 [exp]	16.7	0.8151

Compare expression of checked genes

Lus10007962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.