Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08160 597 / 0 ATPK3 serine/threonine protein kinase 3 (.1.2) AT2G32850 123 / 5e-31 Protein kinase superfamily protein (.1.2) AT1G18890 71 / 3e-13 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT2G41860 70 / 7e-13 CPK14 calcium-dependent protein kinase 14 (.1.2) AT3G51850 69 / 7e-13 CPK13 calcium-dependent protein kinase 13 (.1) AT4G04710 68 / 3e-12 CPK22 calcium-dependent protein kinase 22 (.1) AT1G74740 67 / 3e-12 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT1G30270 67 / 3e-12 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G57630 67 / 5e-12 CIPK21, SnRK3.4 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1) AT3G17510 65 / 2e-11 CIPK1, SnRK3.16 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013493 [exp] 681 / 0 AT5G08160 592 / 0.0 serine/threonine protein kinase 3 (.1.2) Lus10034642 [exp] 489 / 8e-175 AT5G08160 499 / 4e-179 serine/threonine protein kinase 3 (.1.2) Lus10035273 [exp] 239 / 7e-78 AT5G08160 238 / 7e-78 serine/threonine protein kinase 3 (.1.2) Lus10003916 [exp] 131 / 1e-33 AT2G32850 661 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037472 [exp] 130 / 3e-33 AT2G32850 660 / 0.0 Protein kinase superfamily protein (.1.2) Lus10009947 [exp] 77 / 3e-15 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10027808 [exp] 74 / 3e-14 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10004807 [exp] 72 / 2e-13 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10026742 [exp] 71 / 2e-13 AT3G57530 793 / 0.0 calcium-dependent protein kinase 32 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G057300 [exp] 623 / 0 AT5G08160 610 / 0.0 serine/threonine protein kinase 3 (.1.2) Potri.015G055200 [exp] 617 / 0 AT5G08160 600 / 0.0 serine/threonine protein kinase 3 (.1.2) Potri.001G228100 [exp] 126 / 5e-32 AT2G32850 717 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G052900 [exp] 72 / 1e-13 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.016G054600 [exp] 71 / 2e-13 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.016G117200 [exp] 71 / 2e-13 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.006G062800 [exp] 70 / 4e-13 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.012G071700 [exp] 69 / 7e-13 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.009G052700 [exp] 69 / 1e-12 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.006G101300 [exp] 68 / 2e-12 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10007963 pacid=23162311 polypeptide=Lus10007963 locus=Lus10007963.g ID=Lus10007963.BGIv1.0 annot-version=v1.0 ATGGGCTGCAATTTCTCCGGCCTCAATGCTCTCTACGACGCAGTGAACGGCGGCGGAGACGTTTGGATCAACGAGAACCGGTTCAGAATCGTTAGGCAGC TCGGAGAAGGTGGGTTCGCTTTCGTCTATCTTGTCCAAGAGGTCTTCCCTGAAAACTCTTCCTCCGGCACCGGCCTTGCCGCCAAAGCCAATGACAAATC GCATCTCTCCGATGATGGAACTTATGCAATGAAGAAGGTTCTGATTCAGAATAACGAGCAGTTGGAGTTGGTTCGAGAAGAGATTCGAGTTTCGTCGTTG TTTAGCCACCCGAATCTTCTTCCTTTGCTGGATCATGCCATCATTTCTGTTAAGACTACTCAAGAAGCATCATCCTCGAACCACGAAGCGTATTTACTAT TTCCAGTGCACTTGGATGGAACCTTATTGGACAATTCGATAGCCATGATGGCAAAGAAAGAGTTCTTTTCGACCTCGGATGTTCTTCAAATATTTCGACA ACTTTGTGCAGGATTGAAACATATGCACAGTCTTGAGCCACCATACGCACACAACGATGTGAAACCTGGAAATGTTCTTATAACACATAGGAAAGGAAAG TCACCCCTTGCCATACTGATGGATTTCGGCAGTGCTCGGCCAGCTAGAAAGCAAATCCGTTCGCGAACAGAGGCGCTTCAACTGCAGGAATGGGCAGCAG AGCATTGTTCGGCGCCTTTTAGAGCTCCCGAATTATGGGATTGCTCAAGTCAAGCTGATATCGATGAAAGGACCGATGTCTGGTCTCTGGGATGCACACT TTATGCCATCATGTACGGTGTATCTCCATTTGAGTATGCTCTTGGAGAATCCGGAGGGAGCCTACAGCTAGCCATTCTAAACGCACAGATAAAATGGCCA GCCGGACCGAAGCCTCCTTACCCAGACGCCTTACACCAATTCGTCAAGTGGATGCTTCAGCCGCAAGGAACAGTTCGTCCCCGCATTGACGACATCATCA TTCACGTCGACAAGTTGATTTTGAAGTTTTCGAGCTAA
AA sequence Show only first row Show all	>Lus10007963 pacid=23162311 polypeptide=Lus10007963 locus=Lus10007963.g ID=Lus10007963.BGIv1.0 annot-version=v1.0 MGCNFSGLNALYDAVNGGGDVWINENRFRIVRQLGEGGFAFVYLVQEVFPENSSSGTGLAAKANDKSHLSDDGTYAMKKVLIQNNEQLELVREEIRVSSL FSHPNLLPLLDHAIISVKTTQEASSSNHEAYLLFPVHLDGTLLDNSIAMMAKKEFFSTSDVLQIFRQLCAGLKHMHSLEPPYAHNDVKPGNVLITHRKGK SPLAILMDFGSARPARKQIRSRTEALQLQEWAAEHCSAPFRAPELWDCSSQADIDERTDVWSLGCTLYAIMYGVSPFEYALGESGGSLQLAILNAQIKWP AGPKPPYPDALHQFVKWMLQPQGTVRPRIDDIIIHVDKLILKFSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10007963 [exp]	0	1
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10039619 [exp]	7.5	0.8163
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10037108 [exp]	16.1	0.8297
AT4G32140			EamA-like transporter family (...		Lus10006194 [exp]	16.9	0.8489
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10008148 [exp]	18.4	0.7443
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10027375 [exp]	18.7	0.8027
AT1G67550		URE	urease (.1)		Lus10036993 [exp]	22.4	0.8110
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Lus10007322 [exp]	30.4	0.7578
AT3G48860			unknown protein		Lus10016721 [exp]	36.7	0.8078
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10025727 [exp]	37.9	0.7694
AT5G63220			unknown protein		Lus10023490 [exp]	38.1	0.7559

Compare expression of checked genes

Lus10007963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.