Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13580 344 / 5e-119 LOH3, LAG13 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) AT3G25540 300 / 2e-101 LAG1 LONGEVITY ASSURANCE GENE 1, TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT1G26200 288 / 1e-96 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT3G19260 206 / 7e-65 LOH2, LAG1 HOMOLOG 2, LAG1 HOMO, LAG1HOMOLOG2 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013494 [exp] 521 / 0 AT1G13580 381 / 1e-133 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10029096 [exp] 339 / 7e-117 AT1G13580 487 / 2e-175 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10030571 [exp] 325 / 3e-111 AT1G13580 491 / 2e-176 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10030918 [exp] 324 / 1e-110 AT1G13580 490 / 4e-176 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10013063 [exp] 322 / 3e-110 AT1G13580 469 / 3e-168 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10014055 [exp] 182 / 1e-55 AT3G19260 316 / 2e-108 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Lus10019859 [exp] 179 / 2e-54 AT3G19260 343 / 7e-119 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055000 [exp] 355 / 4e-123 AT1G13580 378 / 3e-132 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.010G134700 [exp] 347 / 8e-120 AT1G13580 444 / 1e-158 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.008G113900 [exp] 340 / 4e-117 AT1G13580 438 / 4e-156 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.009G101800 [exp] 224 / 3e-72 AT3G19260 334 / 2e-115 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Potri.004G141000 [exp] 220 / 2e-70 AT3G19260 364 / 2e-127 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10007964 pacid=23162315 polypeptide=Lus10007964 locus=Lus10007964.g ID=Lus10007964.BGIv1.0 annot-version=v1.0 ATGGAATTTCTTCTTCTCCAGACTTCACCGTCGATCAATTGGGACTCCGAATCGTACCCATCGGCGTCCGATTTCCTCGCTATCCCCTTCTTCGCCGTCT TCTTCCCTCTGCTCCGGCTCTTCCTCGACCGATTCATCTTTCAGAAAGTTTCTGTACGGCTGATTTTGGGCGGAGGGAAACGGAGGAGCATCGATTTCGC GACTCGAGAGGAGAGGAAGACGATTACCAAGTTCAAGGAGTCGGCATGGAAGCTTGTGTATTTCTTATCGGCGGATGTGTTGGCTCTGTACGTTTCATGT AACGAGCCTTGGTTCGTCGATACCAAGTGCTTCTATGTCGGTCCGGGCGATCAAGTCTGGCCCGACCTTAAAACCAAGTTGAAACTGAAGGGTCTCTACA TGTACGGCTCTGGATTCTATGTGTACTCGACCTTCGCTTTGATGTTCTGGGAGACTCGAAGGTCCGATTTCGCGGTCTCCATGGGTCATCATCTGGCTAC TTTAGCTCTCCTTTTGTTGTCTTACATGACCAGGTTTCCTCGCGTTGGCGCGATCGTTCTAGCAATCCACGACGCGACGGACATGTTCCTGGAGACAGCA AAGATGGCGAGATATGGCGGATTCGAAGCCCTCTCGATTTTTCTCTTTGCGATGTTCGTCCTGGTTTGGACCGCACTGCGGATCGTCTGCTTCCCTTTGT GGATACTGAGAAGTACGAGCACTGAAATCGTAAGGATTCTCGACGTGGAGAAGCATGGCATTGCGGGACCGGTGTACTACTATCTCTTCAACACTCTGCT CATCTGCTTGCTCGCCGTCAACGTGTATTGGTGGAAGTTGATGATCATGATGGTCGTCGAACAGATCAAGTCCAAAGGCAAGCTTGGAGACGACATTCGA TCAGATTCTGAAGGTGAAGAAGATGATCATGTTGACTGA
AA sequence Show only first row Show all	>Lus10007964 pacid=23162315 polypeptide=Lus10007964 locus=Lus10007964.g ID=Lus10007964.BGIv1.0 annot-version=v1.0 MEFLLLQTSPSINWDSESYPSASDFLAIPFFAVFFPLLRLFLDRFIFQKVSVRLILGGGKRRSIDFATREERKTITKFKESAWKLVYFLSADVLALYVSC NEPWFVDTKCFYVGPGDQVWPDLKTKLKLKGLYMYGSGFYVYSTFALMFWETRRSDFAVSMGHHLATLALLLLSYMTRFPRVGAIVLAIHDATDMFLETA KMARYGGFEALSIFLFAMFVLVWTALRIVCFPLWILRSTSTEIVRILDVEKHGIAGPVYYYLFNTLLICLLAVNVYWWKLMIMMVVEQIKSKGKLGDDIR SDSEGEEDDHVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10007964 [exp]	0	1
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013494 [exp]	1.0	0.9339
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10011309 [exp]	3.9	0.8683
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10006676 [exp]	8.6	0.8121
AT1G70250			receptor serine/threonine kina...		Lus10025553 [exp]	10.2	0.8345
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	11.3	0.8880
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10006054 [exp]	12.0	0.8362
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	15.8	0.8568
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10006261 [exp]	17.3	0.8280
AT4G21510			F-box family protein (.1)		Lus10018432 [exp]	22.2	0.8475
					Lus10007301 [exp]	22.4	0.8298

Compare expression of checked genes

Lus10007964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.