Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01190 148 / 8e-39 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT3G18230 142 / 5e-37 Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 110 / 3e-26 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 97 / 1e-21 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G16220 95 / 6e-21 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 95 / 7e-21 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G25300 91 / 2e-20 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G46920 92 / 1e-19 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49920 87 / 6e-19 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G26510 83 / 2e-18 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013495 [exp] 376 / 6e-125 AT2G01190 176 / 1e-46 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 183 / 2e-54 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007952 [exp] 134 / 6e-34 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002588 [exp] 116 / 2e-28 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10017612 [exp] 108 / 3e-25 AT5G16220 185 / 1e-52 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10033570 [exp] 107 / 4e-25 AT5G16220 194 / 9e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 102 / 5e-25 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 100 / 2e-22 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10019577 [exp] 100 / 2e-22 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G053500 [exp] 170 / 7e-47 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 145 / 1e-37 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 142 / 2e-36 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 115 / 5e-28 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 112 / 4e-27 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 98 / 5e-22 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.009G080200 [exp] 97 / 8e-22 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.018G114300 [exp] 95 / 1e-20 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.004G095600 [exp] 94 / 1e-20 AT5G16220 140 / 2e-36 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.017G119100 [exp] 94 / 2e-20 AT5G16220 126 / 2e-31 Octicosapeptide/Phox/Bem1p family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10007965 pacid=23162317 polypeptide=Lus10007965 locus=Lus10007965.g ID=Lus10007965.BGIv1.0 annot-version=v1.0 ATGGATCCACCACCACCGCCGCCGGCGGCAGAGTCCATCGACTCCCCTCCTAAACGGCCGCATTCAAGCCACGACGACAGCAGAGCAGGAGGAGGAGGAG GGAAGCTCCGGCTGATGTGCAGTTACGGCGGACACATTATCCCCCGCCCACACGACAAGTCACTCTGTTACGTCGGAGGCGAGACCCGGATCGTTGTCGT CGAACGGAGCTCCGCCACCGTGGCCTCCCTCTTCGCCCGCCTCTCCCGCTCTCTGTCCCTCAACGGCCGGTCATTCACCCTCAAGTACCAGCTCCCGAAC GAAGACCTCGACTCATTGGTCTCAGTCGCTTCTGACGAAGACTTGGACAACATGATCGATGAATACGACCGGATCGCCGCCGCCTGCGGCGGCGGTGGCG CAAGAATTCGACTTTTTGTGTTCTTCAACAAGCCGGCCACTGCAGCTTCGATGGGCTCCATCAGATCCGAGTCGTGGTTCCTTGACTCGCTCAATTCGGG TTCTCCTTCCGGGTCGGAATCCGGGTTCCTCCTCCTGCCGAGAAACCTCTCGGATACCGCCTTGGTTACTGGGATCGTCGGCGATCATCATCAGCATGGC CATTACCGTAGTCAAGGCCATCAGGACTCGCTGATCTTGGTGGAGAGTTTCACTACTTCTGCTGTCACCGAGCCGCCGCCTCCGCCGTCTTTCGGATCGA CGTCTCCGCCTGAGAGGGGGAATAATCTGTTGAATCTGCTGCAGCCGATTCTAGTCAGGGAAGCGGGGGATTCGGGCAGTGGTAATAATCAGGAGCAGTT CCAATTCTATCGTAATCAGCAATTGGGTTCTGATCAGATTCAATTGGACAACATTTCCATTACTGCTACAGCTCCCAATTCGTTCTCTTCTTCGTCATCT TCTGCTGTTCCTCCGCCGCCACCGCCGGCTCCATCGATTACGCCCACCGGATCCAGCGAGAATCTGAATCGGATATCGTCGGAGGACGAGGAGGATACCC GATCGGATCACGGCCGATCAGCTCCGGTTAGTTACCGTCAACCGCCGCTCTCCCTGTACCATCAGCTACATATTGGACAACATTTCCATTACTGCTACAG CTCCCAATTCGTTCTCTTCTTCGTCATCTTCTGCTGTTCCTCCGCCGCCACCGCCGGCTCCATCGATTACGCCCACCGGATCCAGCGAGAATCTGAATCG GATATCGTCGGAGGACGAGGAGGATACCCGATCGGATCACGGCCGATCAGCTCCGGTTAG
AA sequence Show only first row Show all	>Lus10007965 pacid=23162317 polypeptide=Lus10007965 locus=Lus10007965.g ID=Lus10007965.BGIv1.0 annot-version=v1.0 MDPPPPPPAAESIDSPPKRPHSSHDDSRAGGGGGKLRLMCSYGGHIIPRPHDKSLCYVGGETRIVVVERSSATVASLFARLSRSLSLNGRSFTLKYQLPN EDLDSLVSVASDEDLDNMIDEYDRIAAACGGGGARIRLFVFFNKPATAASMGSIRSESWFLDSLNSGSPSGSESGFLLLPRNLSDTALVTGIVGDHHQHG HYRSQGHQDSLILVESFTTSAVTEPPPPPSFGSTSPPERGNNLLNLLQPILVREAGDSGSGNNQEQFQFYRNQQLGSDQIQLDNISITATAPNSFSSSSS SAVPPPPPPAPSITPTGSSENLNRISSEDEEDTRSDHGRSAPVSYRQPPLSLYHQLHIGQHFHYCYSSQFVLFFVIFCCSSAATAGSIDYAHRIQRESES DIVGGRGGYPIGSRPISSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10007965 [exp]	0	1
					Lus10006661 [exp]	4.7	0.9407
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10009378 [exp]	6.6	0.9407
					Lus10003840 [exp]	8.1	0.9407
					Lus10022573 [exp]	9.4	0.9407
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	10.5	0.9407
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10019131 [exp]	11.1	0.8344
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10038264 [exp]	11.5	0.9407
					Lus10012429 [exp]	12.4	0.9407
					Lus10007179 [exp]	13.3	0.9407
					Lus10005396 [exp]	14.1	0.9407

Compare expression of checked genes

Lus10007965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.