Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73750 209 / 1e-62 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) AT1G15060 182 / 2e-51 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013496 [exp] 343 / 3e-113 AT1G15060 423 / 2e-142 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10034107 [exp] 183 / 1e-51 AT1G15060 774 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10000099 [exp] 114 / 7e-29 AT1G15060 331 / 6e-111 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10043481 [exp] 112 / 2e-26 AT1G15060 762 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G053700 [exp] 223 / 1e-67 AT1G15060 505 / 4e-175 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Potri.010G119700 [exp] 181 / 4e-51 AT1G15060 751 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Potri.008G124400 [exp] 111 / 3e-26 AT1G15060 743 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007966 pacid=23162310 polypeptide=Lus10007966 locus=Lus10007966.g ID=Lus10007966.BGIv1.0 annot-version=v1.0 ATGTCCAGTCGTCGGGATCCTATCTCTACCACGACGAAGACCGGCTTTCTCCCCACCACGGGCTGCACCGCCGCTTCTGCAAATGTCGGCAGCGCCGGTC GTGGTGAAGGGGAGGAAGATGGAGAAGAAGCCTGCAATATGTACTGCCGACGAGCTTCACTTCGTCGACGCTTACAATTCGGATTGGAAGGCTCTCTCTT TGGCGCTACCTCCCTTCTTCCTCTTCCTTTGCCACTGAGGAAGCATCCGCTGTTGCTGTTATCCGGAATCGCCACCAATGCTGTCGGATTCGATCTCTAT CCAGAGGAGTCGTTTGCTCGTTCAATGGCGGCGGAAGCGTTCGATACAAGGGTGCTTGAGCTTCGAGGATCTGGTTTGAGTATTCTGGGTGGTGAAAATG AAATCTCCTCTTTCGTTAAAAGCAGAATAGAACGAAGGAGGCCATCTGAGTTGGTGATGAATCTTGTTGACAGATTGTCGAGCTTCTTTGATGAAGAAGG AACTCAGCAGTTTGTTTCTCCGGATTTTCGAGAAGTTTTCGCTACGGCATTGGAAGATGTCGTTGAAGAACTGGAATTCGTTGCCAAGTGCGATTGGGAC TTCGATCATTATCTCGAAGAGGACTTGCCCTCCGCTATGGAGTATATAAGGAGTCGAAGCGAACCGAAAGATGGCAAGTTGTTTGCAGTCGGGCACTCCA TGGGCGGGATCCTCCTTTATGAAATGCTCGCCCGATCCTGCAAAGGCTCTCAACGTTCCTGCGATCCCGGTGGGGAAAATGATTTCGACAGCTCATCTAT TGTCGTCGAATATCCCTTATTTGATGCCGTGGTTGAAGTCTCAAATCACCATCCCTGTCATGCTGGATTCCGAAGCGTTGAAAAAGCTCGTGTCAGACGG ACTTTGTACAGTCCCTGCCAAGCTACTACTTCAGATGACGTCAGCATTCCAAGAGGGCGGATTTTGGAACAGAACCAGAAACTTCTTCTACAAGCATCAT CTGCGAAGTGTAATGTCCCAGTGTTGGCTCTAGCCGGGGATCAAGATCTCATTTGCCCTCCTGCGGCTGCTTATGAGACGGCAAAGGTTATTCGTAAGGA CTTGGTTACGTACCGAGTGATTGGAGGAGACTTGGTTACGTACCGAGTGATTGGAGGAGGACCCGGTGGTGCGAACTGTGGACATTTCGATCTGGTTGGA GGTCGTTTGGCTTCTCGCGAAGTGTATCCACTCATAATTGATTTCTTGGGCCGACGAGATCTATGA
AA sequence Show only first row Show all	>Lus10007966 pacid=23162310 polypeptide=Lus10007966 locus=Lus10007966.g ID=Lus10007966.BGIv1.0 annot-version=v1.0 MSSRRDPISTTTKTGFLPTTGCTAASANVGSAGRGEGEEDGEEACNMYCRRASLRRRLQFGLEGSLFGATSLLPLPLPLRKHPLLLLSGIATNAVGFDLY PEESFARSMAAEAFDTRVLELRGSGLSILGGENEISSFVKSRIERRRPSELVMNLVDRLSSFFDEEGTQQFVSPDFREVFATALEDVVEELEFVAKCDWD FDHYLEEDLPSAMEYIRSRSEPKDGKLFAVGHSMGGILLYEMLARSCKGSQRSCDPGGENDFDSSSIVVEYPLFDAVVEVSNHHPCHAGFRSVEKARVRR TLYSPCQATTSDDVSIPRGRILEQNQKLLLQASSAKCNVPVLALAGDQDLICPPAAAYETAKVIRKDLVTYRVIGGDLVTYRVIGGGPGGANCGHFDLVG GRLASREVYPLIIDFLGRRDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73750			Uncharacterised conserved prot...		Lus10007966 [exp]	0	1
					Lus10005396 [exp]	3.7	0.9951
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10007234 [exp]	4.6	0.9560
AT1G76140			Prolyl oligopeptidase family p...		Lus10019994 [exp]	5.0	0.9303
					Lus10003840 [exp]	5.3	0.9951
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	6.5	0.9951
					Lus10022573 [exp]	7.5	0.9951
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10038264 [exp]	8.4	0.9951
					Lus10006661 [exp]	9.2	0.9951
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10006687 [exp]	9.9	0.9079
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10009378 [exp]	9.9	0.9951

Compare expression of checked genes

Lus10007966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.