Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73760 172 / 1e-51 RING/U-box superfamily protein (.1) AT1G17970 160 / 7e-47 RING/U-box superfamily protein (.1) AT5G42940 112 / 4e-28 RING/U-box superfamily protein (.1) AT4G31450 110 / 2e-27 RING/U-box superfamily protein (.1) AT1G45180 108 / 1e-26 RING/U-box superfamily protein (.1) AT4G34040 105 / 2e-25 RING/U-box superfamily protein (.1) AT2G15530 105 / 2e-25 RING/U-box superfamily protein (.1.2.3.4) AT5G10650 99 / 3e-23 RING/U-box superfamily protein (.1.2) AT5G24870 98 / 5e-23 RING/U-box superfamily protein (.1.2) AT1G53190 94 / 1e-21 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013497 [exp] 360 / 3e-127 AT1G73760 199 / 1e-62 RING/U-box superfamily protein (.1) Lus10021722 [exp] 201 / 2e-63 AT1G17970 159 / 1e-45 RING/U-box superfamily protein (.1) Lus10034644 [exp] 175 / 5e-54 AT1G17970 139 / 3e-39 RING/U-box superfamily protein (.1) Lus10020145 [exp] 106 / 5e-26 AT4G31450 224 / 4e-67 RING/U-box superfamily protein (.1) Lus10026941 [exp] 104 / 3e-25 AT5G24870 257 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10010372 [exp] 103 / 8e-25 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1) Lus10040389 [exp] 101 / 4e-24 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10042443 [exp] 96 / 2e-22 AT5G10650 242 / 2e-73 RING/U-box superfamily protein (.1.2) Lus10023507 [exp] 84 / 3e-18 AT2G37150 138 / 4e-35 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G053800 [exp] 253 / 5e-83 AT1G73760 271 / 2e-88 RING/U-box superfamily protein (.1) Potri.015G043900 [exp] 251 / 3e-82 AT1G73760 258 / 2e-83 RING/U-box superfamily protein (.1) Potri.002G124300 [exp] 114 / 1e-28 AT5G42940 377 / 3e-121 RING/U-box superfamily protein (.1) Potri.018G005600 [exp] 111 / 7e-28 AT5G24870 284 / 6e-89 RING/U-box superfamily protein (.1.2) Potri.006G274700 [exp] 111 / 9e-28 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2) Potri.005G139900 [exp] 111 / 1e-27 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1) Potri.007G045500 [exp] 107 / 3e-26 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1) Potri.001G304900 [exp] 105 / 2e-25 AT4G34040 370 / 4e-118 RING/U-box superfamily protein (.1) Potri.009G100100 [exp] 102 / 2e-24 AT4G34040 392 / 5e-127 RING/U-box superfamily protein (.1) Potri.010G220700 [exp] 100 / 1e-23 AT2G37150 180 / 6e-50 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10007967 pacid=23162304 polypeptide=Lus10007967 locus=Lus10007967.g ID=Lus10007967.BGIv1.0 annot-version=v1.0 ATGGTGATTCAGGACGTTTGGTGTGGCCCTGGAATCGGATTCTCTCCCGAAGCCGCTGTTGTTGATTCCGTTGACTGCGTCGTCAACAGACGGAACAGGA TCGATGCAGTGGAGAAATTCAATCCAAGGGAGCGAGAAAGAGAAAGGGAAAGAGAGGCGATTTGGGGATACTTCATCAGCTTGGTGATTTCTATTATCGT GATTGCTGTATGGTTCACTGGACCAATCTTGGCTTGGCAGCGTCCTTGTTTATCTAGGCGAGCAGCTGTTGACCCTCAAGCCTTTGCCTTCTGGGATGCT GACCCTGCTGCATTTGCGACATTGAGGCCCGAACAGGACATGCCCGGAGGAAGTAGGTATTACCGTCATCTTCGACGTGCTCCACCTGATGGCCTAGCCG AGATGCTGATGCTCCAAAATGGTATTGTGATGGGAGGACGACTGGATAGGTTCAATGAATGGAGACTTGATATCGACAGTATGTCATACGAGCAACTGCT CGAGCTGGAAGATAGGATCGGGTACGTAAGCACCGGACTGAAAGAAGATGAGATTGGCCACTGTATAAGGAAGTACAAGCTCTCGGTCCTGAGCAAGCTT CCGTCCCACATCCAGATGAGCTTGGACAAGAAGTGCAGCATTTGCCAGGAGGATTTCGAAGGAGGAGATGACGAGGTCGGGAAGCTGGAATGCGGGCATG GATTTCACATACTGTGCATCAAGCAGTGGTTGGCTCACAAGAACAACTGCCCAGTTTGTAAAACTGCACCACTCCCTCGAAGCTAA
AA sequence Show only first row Show all	>Lus10007967 pacid=23162304 polypeptide=Lus10007967 locus=Lus10007967.g ID=Lus10007967.BGIv1.0 annot-version=v1.0 MVIQDVWCGPGIGFSPEAAVVDSVDCVVNRRNRIDAVEKFNPREREREREREAIWGYFISLVISIIVIAVWFTGPILAWQRPCLSRRAAVDPQAFAFWDA DPAAFATLRPEQDMPGGSRYYRHLRRAPPDGLAEMLMLQNGIVMGGRLDRFNEWRLDIDSMSYEQLLELEDRIGYVSTGLKEDEIGHCIRKYKLSVLSKL PSHIQMSLDKKCSICQEDFEGGDDEVGKLECGHGFHILCIKQWLAHKNNCPVCKTAPLPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73760			RING/U-box superfamily protein...		Lus10007967 [exp]	0	1
AT1G73760			RING/U-box superfamily protein...		Lus10013497 [exp]	1.4	0.8135
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10003875 [exp]	15.8	0.7771
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10001822 [exp]	16.4	0.7828
AT3G22380		TIC	time for coffee (.1.2)		Lus10002447 [exp]	17.0	0.6984
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032118 [exp]	24.9	0.7561
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10033599 [exp]	25.9	0.7188
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10007936 [exp]	27.7	0.7160
					Lus10002467 [exp]	29.0	0.6347
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Lus10043464 [exp]	32.4	0.7187
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	33.9	0.7277

Compare expression of checked genes

Lus10007967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.