Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73770 52 / 6e-09 unknown protein AT3G18240 44 / 2e-05 Ribosomal protein S24/S35, mitochondrial (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013498 [exp] 168 / 2e-54 AT1G73770 56 / 5e-10 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G046000 [exp] 56 / 3e-10 AT1G73770 / unknown protein Potri.015G044100 [exp] 52 / 3e-08 AT3G18240 461 / 2e-161 Ribosomal protein S24/S35, mitochondrial (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007968 pacid=23162275 polypeptide=Lus10007968 locus=Lus10007968.g ID=Lus10007968.BGIv1.0 annot-version=v1.0 ATGAAAGGAACAACTCTCTTCAGAACTTTCTCAACCTCCAGTCGAACTATTCTCCGTAACAAACCCATCCAAGCCCAGAAATCTCAAGACATCGCCAGGT ACGCTAATCCGACAACTCGAAGCCGGTTTTACTCGTCGGGTTCGTCGAGTAAATCAACACCCCGCCAGGTCGATAATCAGCCTGGTAATAATCCATCAAT TGAAGGTGTAGAAATCGTCAGTGATGAAGAGCTGAAACGGCGCATCGAGAGATTCTACGACGGGGACGGCGACGCGATTCCGTCGATTTTCGAAGCCATC TTGGCGCGGAAGTTGGCTGGTGTGCACGACGACGAGAATCTGATGAAAGAGCTCCGGGAGAAGTTTCCGGCGGAGATTAATGGGAAGGACGGAGAAGTTT CCGACTGGGACGATGATCTGGACGACGAAGAGGATGACGAGGATGATGATTAG
AA sequence Show only first row Show all	>Lus10007968 pacid=23162275 polypeptide=Lus10007968 locus=Lus10007968.g ID=Lus10007968.BGIv1.0 annot-version=v1.0 MKGTTLFRTFSTSSRTILRNKPIQAQKSQDIARYANPTTRSRFYSSGSSSKSTPRQVDNQPGNNPSIEGVEIVSDEELKRRIERFYDGDGDAIPSIFEAI LARKLAGVHDDENLMKELREKFPAEINGKDGEVSDWDDDLDDEEDDEDDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73770			unknown protein		Lus10007968 [exp]	0	1
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014164 [exp]	4.1	0.6890
AT5G63690			Nucleic acid-binding, OB-fold-...		Lus10035799 [exp]	11.1	0.6373
AT1G73770			unknown protein		Lus10013498 [exp]	12.0	0.6286
AT5G66450			Phosphatidic acid phosphatase ...		Lus10028326 [exp]	14.6	0.6191
AT1G48200			unknown protein		Lus10042704 [exp]	16.5	0.6010
AT5G19090			Heavy metal transport/detoxifi...		Lus10004465 [exp]	27.0	0.5804
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	37.0	0.5961
AT2G28105			unknown protein		Lus10016142 [exp]	38.1	0.5674
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10033861 [exp]	44.0	0.5556
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10019927 [exp]	49.7	0.5707

Compare expression of checked genes

Lus10007968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.