Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013499 [exp] 78 / 3e-19 AT1G48745 49 / 4e-08 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007969 pacid=23162299 polypeptide=Lus10007969 locus=Lus10007969.g ID=Lus10007969.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAGACGTTACTGATCATGAGTAACCGCGAGCAGCAGGAAGATCAAAAGCCAGCCGCCGGCAAGGCAATCAAGAAGAAAAATCATCACAAGC ACAAGTCCAAGAAGGCATCCGCATCGGCGGCGGAGGAATCAGCTTCGTCGTCATCGGCGTCGTCGCCGCCGCCGTCTTGTTCGTGTGGTAAGGCGGCGGA GTACGGATGCAGCTGCTGTTTGTGCTGCGTGTATTGCCCACTTTCGGTGGTGTGGTGCTGCGTGAAGCTGCCGTGTAAGGTTGGGATCAGAGCTGCACAG GCGGCGAAGAGGCAGTTAACTAATGGTGGTGGTAGTGGAAGTTGGTCTTGTGGGAGGAAGAAGCCTTCTTACTACTATTCTTCTTCGTTCTCCGATCTCG AATTCTCTCCGCCGTAG
AA sequence Show only first row Show all	>Lus10007969 pacid=23162299 polypeptide=Lus10007969 locus=Lus10007969.g ID=Lus10007969.BGIv1.0 annot-version=v1.0 MEEETLLIMSNREQQEDQKPAAGKAIKKKNHHKHKSKKASASAAEESASSSSASSPPPSCSCGKAAEYGCSCCLCCVYCPLSVVWCCVKLPCKVGIRAAQ AAKRQLTNGGGSGSWSCGRKKPSYYYSSSFSDLEFSPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48745			unknown protein		Lus10007969 [exp]	0	1
AT4G24015			RING/U-box superfamily protein...		Lus10023055 [exp]	5.1	0.6574
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10033120 [exp]	19.3	0.6264
AT4G15470			Bax inhibitor-1 family protein...		Lus10041240 [exp]	20.1	0.6293
AT5G65000			Nucleotide-sugar transporter f...		Lus10026182 [exp]	22.1	0.6270
AT4G16444			unknown protein		Lus10016696 [exp]	23.0	0.6128
AT1G05270			TraB family protein (.1)		Lus10038420 [exp]	24.6	0.4923
AT3G11690			unknown protein		Lus10029349 [exp]	32.6	0.5948
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10041652 [exp]	50.6	0.5930
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10039024 [exp]	75.7	0.5652
					Lus10036643 [exp]	97.8	0.5322

Compare expression of checked genes

Lus10007969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.