Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73990 770 / 0 SPPA1, SPPA signal peptide peptidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034647 [exp] 833 / 0 AT1G73990 868 / 0.0 signal peptide peptidase (.1) Lus10021721 [exp] 827 / 0 AT1G73990 871 / 0.0 signal peptide peptidase (.1) Lus10013332 [exp] 545 / 0 AT1G73990 626 / 0.0 signal peptide peptidase (.1) Lus10013334 [exp] 538 / 0 AT1G73990 615 / 0.0 signal peptide peptidase (.1) Lus10013333 [exp] 532 / 0 AT1G73990 612 / 0.0 signal peptide peptidase (.1) Lus10013335 [exp] 162 / 4e-46 AT1G73990 174 / 7e-51 signal peptide peptidase (.1) Lus10013336 [exp] 161 / 3e-43 AT1G73990 231 / 2e-69 signal peptide peptidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G047500 [exp] 846 / 0 AT1G73990 847 / 0.0 signal peptide peptidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF01343 [flax] [poplar] Peptidase_S49 Peptidase family S49
Representative CDS sequence Show only first row Show all	>Lus10007970 pacid=23162305 polypeptide=Lus10007970 locus=Lus10007970.g ID=Lus10007970.BGIv1.0 annot-version=v1.0 ATGGCCAGCTGGCTCATCCTTCGAAGATCCGTCACTTCGGCCCTCCTCTCAAAACCATGCCAGTCTCCCTGCATTCGCCAGGCGGCGGTCACCACAAGCC ACCACCAGTACGGCCGAGTGGTTGCTCTGTACGGTCACAATTATCTGTTCGACTCTGAACTTCATCCAAGGAGCTTCTCCGCGGAGTCGGGTGATGATAA GGAGAAACGAAGAAATCAGGAGCCCAAGCCTGCTGCTGCTAAGAGTGTCCAGGTTGAGTATCCCGGGGGAGATTCTGAGCTCAGAGACATCGGAGCTTGG AATAGGTTTCTAGTCAAGATCCGTACCTTACTTGCTTTTCCTTGGCTGCGAATTCGCAAGGGGAGTGTACTGACACTGAAATTGCGTGGCGAGATATCTG ATCAGCTGAAGGGCAGTTTCTTCCGAGGGCTATCTCTGCCTCAGATTTGTGAGAATTTTACCAAAGCTGCTTACGATCCTCGCATTTCCGGTATTTATCT GCATCTAGACTCCTTGAACTGCGGTTGGGGTAAGATTGAAGAGATCCGGAGGCATATATTGGATTTCAAGAAATCAGGTAAGTTCGTTGTTGCCTACATG CCTACTTGCAGGGAGAAGGAATACTATATTGCTTGTGCGTGTTCGGAGGCGTACGCCCCTCCAAGTGCTTATTTCTCATTGTATGGCTTGACTCTTCAAG CATCTTTTCTTGGAGGTGTCCTCGAGAAGGTGGGAGTTCAACCAGAGGTCCAGAGAATTGGTAAATACAAGAGTGCTGGTGATCAGCTAACACGAAAAAG CATGAGTGAAGAAAATTGTGAGATGCTGACAGCATTGCTGGATGATATCTATGGGAATTGGCTGGACAAAGTTTCTTATCAAACAGGAAAGAAAAGAGAA TATTTAGAGAACTTCATTAACGAAGGAGTCTACCAAGTTGAGAGGCTGAGAGATGAAGGGTTGATAACAAACGTACTCTATGACGATGAGGTCAAGTCCC TGCTGAGAAAGAAACATGGAGTTCAAAAGGGGAAAGTCCTTCCAATGGTTAATTACAGGTGGTCGACCAAATTTTATTTTAAGGGGTGTTTGCCGTTGTT TAGGGTGACTGCCCTAGGTCACGGCCACCCGTCGTTTGTGTCCAGTTCTTTACTGAAGTATTCGCGAGTTAGCAATAAGACTGTTGGTTTAGCAGGTGGT GAAGACCAAATAGCTGTACTCCGAGCGTCTGGGAGCATCAGCCGGGTTCGTAGTCAGTTTAGTTCAGCTAGCTCTGGTATCGTTGGGGAGCAATTTATCG AGAAGATTCGTGCTGTTAGAGACTCTAAATATAAAGCTGTTGTCATCAGAATTGACAGTTCTGGAGGTGATGCTCTTGCATCTGATTTAATGTGGAGGGA AATTCGTCTTCTGGCTGGTAGAAAACCTGTAATTGCTTCAATGGCTGATGTCGCAGCAAGTGGAGGGTACTATATGGCAATGGCCGCTAATGTCATTGTT GCAGAGGAGCTGACTTTAACTGGTTCCATTGGTGTAGTTACAGGGAAGTATAACTTGGGAAAGCTTTATGAAAAGCTTGGATTCAATAAGGAGATCATAT CCAGGGGAAGATATGCTGAACTTTTTGCTGCTGAACAACGCCCTATGAGGCCACATGAAGCAGAACTGTTCGAAAAGTCAGCTCAGAATGCATATAAGCA ATTTCGTGACAAGGCAGCATTTTCAAGATCAATGGATGTGGAAAAGATGGAGAGTGTGGCACAAGGCAGAGTCTGGACGGGTAGACAAGCAGCTTCACTC GGTCTGGTCGATGCAACAGGCGGGATTTCACGAGCCATTGCTATCGCAAAACTTAAGGCTAACATCCCTCAAGACAAACCGGTAACCATTGTTGAGCTTT CAAGGCCGTCTCCAACTTTACCAGAGGTGTTAAGTAATATAGGCAGTTCTATAGCTGGAGTGGACGGAACTCTGAGAGAAGTGCTGCAGGAGTTGACAGC TTCGGAAGGAGTCCAAGCTCGGATGGAAGGAATCATACTGGAACAAGAAGCTTCTTCCCATGCCTACCCCATTCTCCATTTGTTAAAAGATTACCTAGGT GGTTCCAGATGA
AA sequence Show only first row Show all	>Lus10007970 pacid=23162305 polypeptide=Lus10007970 locus=Lus10007970.g ID=Lus10007970.BGIv1.0 annot-version=v1.0 MASWLILRRSVTSALLSKPCQSPCIRQAAVTTSHHQYGRVVALYGHNYLFDSELHPRSFSAESGDDKEKRRNQEPKPAAAKSVQVEYPGGDSELRDIGAW NRFLVKIRTLLAFPWLRIRKGSVLTLKLRGEISDQLKGSFFRGLSLPQICENFTKAAYDPRISGIYLHLDSLNCGWGKIEEIRRHILDFKKSGKFVVAYM PTCREKEYYIACACSEAYAPPSAYFSLYGLTLQASFLGGVLEKVGVQPEVQRIGKYKSAGDQLTRKSMSEENCEMLTALLDDIYGNWLDKVSYQTGKKRE YLENFINEGVYQVERLRDEGLITNVLYDDEVKSLLRKKHGVQKGKVLPMVNYRWSTKFYFKGCLPLFRVTALGHGHPSFVSSSLLKYSRVSNKTVGLAGG EDQIAVLRASGSISRVRSQFSSASSGIVGEQFIEKIRAVRDSKYKAVVIRIDSSGGDALASDLMWREIRLLAGRKPVIASMADVAASGGYYMAMAANVIV AEELTLTGSIGVVTGKYNLGKLYEKLGFNKEIISRGRYAELFAAEQRPMRPHEAELFEKSAQNAYKQFRDKAAFSRSMDVEKMESVAQGRVWTGRQAASL GLVDATGGISRAIAIAKLKANIPQDKPVTIVELSRPSPTLPEVLSNIGSSIAGVDGTLREVLQELTASEGVQARMEGIILEQEASSHAYPILHLLKDYLG GSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10007970 [exp]	0	1
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10014753 [exp]	7.9	0.8427
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10013178 [exp]	10.3	0.8830
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10041322 [exp]	12.8	0.8836
AT5G22760			PHD finger family protein (.1)		Lus10020532 [exp]	17.2	0.8822
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10029470 [exp]	17.7	0.8512
AT5G11700			unknown protein		Lus10005497 [exp]	19.3	0.8657
AT1G55540		EMB1011	Nuclear pore complex protein (...		Lus10021859 [exp]	22.0	0.8754
					Lus10021651 [exp]	27.7	0.8766
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10023119 [exp]	31.0	0.8504
					Lus10004294 [exp]	33.9	0.8723

Compare expression of checked genes

Lus10007970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.