Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08130 289 / 7e-91 bHLH BIM1, bHLH046 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G69010 162 / 2e-45 bHLH bHLH102, BIM2 BES1-interacting Myc-like protein 2 (.1) AT5G38860 118 / 2e-29 bHLH bHLH141, BIM3 BES1-interacting Myc-like protein 3 (.1) AT2G24260 49 / 6e-06 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT1G09530 49 / 6e-06 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT4G30980 48 / 1e-05 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G67110 47 / 1e-05 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G58010 46 / 3e-05 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT1G63650 47 / 5e-05 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G41315 46 / 6e-05 bHLH MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013502 [exp] 828 / 0 AT5G08130 330 / 6e-107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10026684 [exp] 171 / 3e-48 AT1G69010 276 / 6e-92 BES1-interacting Myc-like protein 2 (.1) Lus10004630 [exp] 168 / 2e-47 AT1G69010 257 / 2e-84 BES1-interacting Myc-like protein 2 (.1) Lus10034358 [exp] 156 / 1e-42 AT1G69010 168 / 1e-49 BES1-interacting Myc-like protein 2 (.1) Lus10005091 [exp] 126 / 5e-31 AT1G69010 149 / 5e-41 BES1-interacting Myc-like protein 2 (.1) Lus10021846 [exp] 46 / 7e-05 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10022833 [exp] 45 / 0.0001 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10042572 [exp] 44 / 0.0001 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024811 [exp] 45 / 0.0002 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G065000 [exp] 415 / 4e-139 AT5G08130 352 / 7e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.015G048000 [exp] 263 / 5e-80 AT5G08130 359 / 3e-117 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.004G112900 [exp] 169 / 9e-48 AT1G69010 186 / 1e-56 BES1-interacting Myc-like protein 2 (.1) Potri.010G137600 [exp] 167 / 8e-47 AT1G69010 325 / 4e-111 BES1-interacting Myc-like protein 2 (.1) Potri.008G112000 [exp] 162 / 6e-45 AT1G69010 292 / 4e-98 BES1-interacting Myc-like protein 2 (.1) Potri.017G101700 [exp] 154 / 5e-42 AT1G69010 184 / 5e-56 BES1-interacting Myc-like protein 2 (.1) Potri.002G055400 [exp] 50 / 4e-06 AT2G43010 177 / 6e-50 phytochrome interacting factor 4 (.1.2) Potri.006G135600 [exp] 47 / 2e-05 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.006G186600 [exp] 47 / 3e-05 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.018G109500 [exp] 47 / 3e-05 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007974 pacid=23162309 polypeptide=Lus10007974 locus=Lus10007974.g ID=Lus10007974.BGIv1.0 annot-version=v1.0 ATGGTATTGGACGGTCTTTTTCTTCATTTCCTTGAATCATTCTGTAGTGGGTTTTTGAAATCGGAAACCGATTTGTGGTCTGCAGGAAGGAAAAGGAAAC CAACGCTGGACTTTCTCTCGCTCTGCAGTCATTCATCAGCTGCTGCTGCTCCCCAGCAACAAGATCCGAGCAGGCCATCATCTTCTCAAGGGGTGTATCT CAAGACACATGATTTTCTGCAACCGTTGGAACGTGGAGGGGGCACAGCTGCGAAGGAAGAAACAGAGGCGAGTGAGGTCTCGATGACACCGAAATCACTC CCACCGCAAGCACCGCAGACTTCTGTGGAGCATATACTTCCAGGGGGGATTGGGACGTACAGTATCAGCCACATATCGTACTACAACAACAATCAACAAA GAGTTCCCAAGCCGGAGGGGTCGTCGGTTTTTGTGGGGGGTCAAACGAGCAGTGCGGAGAAAAACGAGGAGAATTCGAATTGCAGTTCTTATAATACAGG AGGAGGAGGAAGTGGGTTCACCCTGTGGGAAGAATCTGCTTTGAAAAAGGGAAAGACAGGGAAGGAGAATTTCGCCGACAGGTCCAACGTCGTTAGAGAG TCTCCGGTGAAGACCGGCGGGCAATGGACCACATCGGAGCGGCCGTCGCAGTCATCGACGAATCACCATAGCAATCATTTCAGCTCTCTTTCACCTCCTG ATCAACCGTCAGGATTAAAGAGACAGAGTTTCATGGACATGATGAAGTCAGCAAAGGATTATGAAGATTTGGACGATGACGATGATTTAGTCCTCAAGAA AGAAAGCCCTCCGGCAGAACTGATCGTTAAAGTTGACGGCAAGAGATCTGATCAGAAAGCTAACACTCCACGTTCAAAACACTCTGCCACTGAACAACGG AGGAGGAGCAAAATCAACGACAGGCAAATGTTGAGAGAAATCATACCACATGGTGATCAAAAAAGAGATAAGGCCTCATTTCTACTAGAGGTGATTGAGT ACATTCAGTTCTTACACGAGAAAGTACATAAGTACGAAGGTTCATCATACCAGGGATGGAATCTTGATCCAGAAATAAAGCTTTCCCCATGGAAGAGCAA CAACAGGACTGATGAAAGCCACGTTGAAGCTAAGAAAGTGTCCATCTCTACTGCAGCAATTCCTGGAGGAGTGCTGCAGAATCCAGCGGGTTCGGACACT AGCTCTGCTACGACCCCGAAAGCAGCAGCCATGGCGTTTCCCATGTCACTGCAGCCTAACATATTCAATCCTGCCAGAGCCGGATGTTCATCCGCTTCAC CTCAAGTAACAAGCGACGTCATCAATGGTGGCGCTATGAGGCAAGCGAGCCTTTCAAGATCCGGTACCGGAAATGGGTTTGATGGTGGCGATCATAAGCT GAAGGAGCATGGCCTCAATGTTGATGGTGGTATGATAAGCATCTCAAGTGCTTACTCTCGAGGGTTGCTGAGCAGCCTGACGGAAGCGCTACGAAGTTCA GGGGTGGATTTGTCGGAGGCGAAAATCTCGGTGCAGGTCGAGGTCGGGAAGGGAGCCAAGTCCAATAGTGCTCCACCATCCATCACCAACAAGGGAGAAA GAGGAATCCAGTTTAGGAGCAATCAAGAGGAACCAAGTCAATTCTTTAAGAAGCTCAAGACAGGGGGTCTCGAGAAGAAGCCTACTAATTAA
AA sequence Show only first row Show all	>Lus10007974 pacid=23162309 polypeptide=Lus10007974 locus=Lus10007974.g ID=Lus10007974.BGIv1.0 annot-version=v1.0 MVLDGLFLHFLESFCSGFLKSETDLWSAGRKRKPTLDFLSLCSHSSAAAAPQQQDPSRPSSSQGVYLKTHDFLQPLERGGGTAAKEETEASEVSMTPKSL PPQAPQTSVEHILPGGIGTYSISHISYYNNNQQRVPKPEGSSVFVGGQTSSAEKNEENSNCSSYNTGGGGSGFTLWEESALKKGKTGKENFADRSNVVRE SPVKTGGQWTTSERPSQSSTNHHSNHFSSLSPPDQPSGLKRQSFMDMMKSAKDYEDLDDDDDLVLKKESPPAELIVKVDGKRSDQKANTPRSKHSATEQR RRSKINDRQMLREIIPHGDQKRDKASFLLEVIEYIQFLHEKVHKYEGSSYQGWNLDPEIKLSPWKSNNRTDESHVEAKKVSISTAAIPGGVLQNPAGSDT SSATTPKAAAMAFPMSLQPNIFNPARAGCSSASPQVTSDVINGGAMRQASLSRSGTGNGFDGGDHKLKEHGLNVDGGMISISSAYSRGLLSSLTEALRSS GVDLSEAKISVQVEVGKGAKSNSAPPSITNKGERGIQFRSNQEEPSQFFKKLKTGGLEKKPTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Lus10007974 [exp]	0	1
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10018667 [exp]	3.6	0.9258
AT1G75510			Transcription initiation facto...		Lus10010631 [exp]	8.2	0.9076
AT5G17450		HIPP21	heavy metal associated isopren...		Lus10028531 [exp]	9.0	0.9088
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10002917 [exp]	14.0	0.9002
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10017995 [exp]	16.2	0.9125
AT2G37840			Protein kinase superfamily pro...		Lus10022593 [exp]	17.7	0.8849
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10031621 [exp]	30.9	0.9047
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10034271 [exp]	34.4	0.8839
					Lus10002465 [exp]	35.4	0.9042
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	36.1	0.9071

Compare expression of checked genes

Lus10007974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.