Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15740 743 / 0 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 729 / 0 O-fucosyltransferase family protein (.1) AT1G14020 595 / 0 O-fucosyltransferase family protein (.1) AT2G03280 553 / 0 O-fucosyltransferase family protein (.1.2) AT2G37980 395 / 2e-131 O-fucosyltransferase family protein (.1) AT5G35570 386 / 2e-127 O-fucosyltransferase family protein (.1) AT1G22460 382 / 2e-127 O-fucosyltransferase family protein (.1) AT5G01100 382 / 3e-126 O-fucosyltransferase family protein (.1) AT3G54100 379 / 3e-125 O-fucosyltransferase family protein (.1) AT5G64600 363 / 1e-120 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013503 [exp] 946 / 0 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 848 / 0 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 847 / 0 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 620 / 0 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 619 / 0 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 602 / 0 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10036785 [exp] 592 / 0 AT1G14020 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 572 / 0 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 565 / 0 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048100 [exp] 809 / 0 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 808 / 0 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 759 / 0 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 750 / 0 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 596 / 0 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 589 / 0 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 399 / 4e-134 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 394 / 9e-130 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 384 / 2e-128 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 380 / 2e-125 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10007975 pacid=23162298 polypeptide=Lus10007975 locus=Lus10007975.g ID=Lus10007975.BGIv1.0 annot-version=v1.0 ATGTGCAGGTGTACTGAGAGAAACTGTGTGGAGATCGGAGAAGATAAGATGGGGTTGGTGAAGGGAGTTGAGAAGGTGAAGAAGAGCTTGTCCAAATCGA AAATGAAGATGTGGATGGTTCGCGCCACGACCTCCGTCTTGCTCTGGACCTGCATCGTCCAATTGACGACGATCGGGGAGCTATGGGGTCCCAGAGTTTT GAAAGGATGGCCTTCTTGCTTCTCCCATGATGAATCGGCCTCTCTGTTGCTGGAGAAGCTTCCCGCTGCTCCTGCTCGCGATCTCCCACCGCCCAAGAGG GTTTACAGAAACAACGGATATCTTATGGTTTCATGCAATGGAGGTCTGAATCAAATGAGGGCTGCGATATGTGACATGGTAGCTATAGCAAGATACTTGA ATGTGACTCTGATTGTTCCGGAGTTGGACAAGACTTCATTTTGGGCTGATCCCAGTGAGTTCCAAGACATATTTGATGTGGATCATTTCATCACATCACT CAGAGATGAGGTTCGGATTTTGAAAGAATTGCCTCCTCGTCTTAAGAAGAGAGTTGAACTAGGAATGACTTACACCATGGCCCCGATTAGTTGGTCAGAC ATCTCGTACTATGGTAACCAGATTCTTCCTTTGATTCAAAGGTATAAAGTTGTGCATCTGAACAGAACGGATACGAGACTTGCAAACAATAATCAGCCTC TGGAGCTTCAGAAGCTACGCTGCCGTGTAAACTTTAGTGCACTTAGATTCACTCCTCAGATAGAGGAGTTGGGTAGAAGAGTGATACGACTACTCAGGCA AAAAGGTCCGTTCTTAGTGCTTCACCTCAGGTATGAAATGGACATGCTGGCGTTCTCTGGTTGTTCTCAAGGTTGTAACAAAGAAGAGGTGGAAGAACTG ACGAGAATGAGATATGCTTATCCATGGTGGAAAGAGAAGGTGATAAACTCCGACCTTAAAAGAAAAGACGGGTTGTGCCCTTTGACACCAGAGGAGACAG CCCTCACTCTCAGGGCATTGGATATTGATTCAAACATGCAAATCTATATCGGAGCCGGTGAAATATACGGCGGAGACAGGAGAATGGCAAGCCTTGCAGC ATCTTATCCTAATCTGGTAAGAAAGGAAACACTATTGGAACCATCAGATTTGAGGTTTTTCCAGAACCATTCTTCGCAGATGGCAGCGTTGGATTATCTC GTTTCATTAGAGAGCGACATTTTCGTGCCGACCTATGATGGCAACATGGCTAAAGTTGTTGAAGGCCACCGCAGATTCCTTGGATTCAAGAGGACAATAC TGCTGGAGCGAAGGCTTTTGGTCGACTTGATAGACCGATATACCAGCGGGACTCTGAGCTGGGACGAGTTCTCAGAAGCTGTGAAGGAAACTCACGCCAC AAGGATGGGAAGCCCCGGTAAAAGGTTAGTGATCCCAGACAAGCCTAAAGAAGAAGACTACTTCTACGCCAACCCCGAAGAATGCCTGGATCAGCAATCC GATGAGCTTCTCAGCAGTATTTGA
AA sequence Show only first row Show all	>Lus10007975 pacid=23162298 polypeptide=Lus10007975 locus=Lus10007975.g ID=Lus10007975.BGIv1.0 annot-version=v1.0 MCRCTERNCVEIGEDKMGLVKGVEKVKKSLSKSKMKMWMVRATTSVLLWTCIVQLTTIGELWGPRVLKGWPSCFSHDESASLLLEKLPAAPARDLPPPKR VYRNNGYLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWADPSEFQDIFDVDHFITSLRDEVRILKELPPRLKKRVELGMTYTMAPISWSD ISYYGNQILPLIQRYKVVHLNRTDTRLANNNQPLELQKLRCRVNFSALRFTPQIEELGRRVIRLLRQKGPFLVLHLRYEMDMLAFSGCSQGCNKEEVEEL TRMRYAYPWWKEKVINSDLKRKDGLCPLTPEETALTLRALDIDSNMQIYIGAGEIYGGDRRMASLAASYPNLVRKETLLEPSDLRFFQNHSSQMAALDYL VSLESDIFVPTYDGNMAKVVEGHRRFLGFKRTILLERRLLVDLIDRYTSGTLSWDEFSEAVKETHATRMGSPGKRLVIPDKPKEEDYFYANPEECLDQQS DELLSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10007975 [exp]	0	1
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10035131 [exp]	1.0	0.9789
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10022485 [exp]	1.4	0.9593
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10031972 [exp]	2.4	0.9377
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10013503 [exp]	3.2	0.9235
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10016790 [exp]	3.5	0.9257
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10038902 [exp]	5.1	0.8970
AT3G24240			Leucine-rich repeat receptor-l...		Lus10018911 [exp]	5.5	0.9145
AT2G37730			Protein of unknown function (D...		Lus10010869 [exp]	7.0	0.9113
AT5G48940			Leucine-rich repeat transmembr...		Lus10028612 [exp]	7.7	0.9012
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10015026 [exp]	8.5	0.9014

Compare expression of checked genes

Lus10007975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.