Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60850 147 / 7e-43 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT1G07640 112 / 3e-29 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT5G60200 110 / 5e-29 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT1G51700 108 / 8e-29 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT1G21340 107 / 1e-27 DOF AtDof1,2 Dof-type zinc finger DNA-binding family protein (.1) AT3G52440 106 / 1e-27 DOF AtDof3,5 Dof-type zinc finger DNA-binding family protein (.1) AT2G28510 106 / 3e-27 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT5G65590 106 / 4e-27 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT2G37590 106 / 5e-27 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT3G45610 104 / 5e-27 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034652 [exp] 167 / 9e-51 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10017882 [exp] 162 / 4e-49 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1) Lus10015425 [exp] 107 / 8e-28 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10016566 [exp] 108 / 1e-27 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10025707 [exp] 108 / 2e-27 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10040305 [exp] 107 / 6e-27 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10014001 [exp] 105 / 9e-27 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10014002 [exp] 102 / 3e-26 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10013586 [exp] 103 / 5e-26 AT3G52440 137 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048300 [exp] 172 / 3e-52 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.012G063800 [exp] 167 / 5e-50 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1) Potri.011G055600 [exp] 117 / 9e-31 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.004G046600 [exp] 114 / 8e-30 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.005G134200 [exp] 112 / 3e-29 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.007G038100 [exp] 111 / 8e-29 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.006G202500 [exp] 110 / 1e-28 AT3G52440 176 / 3e-54 Dof-type zinc finger DNA-binding family protein (.1) Potri.016G069300 [exp] 108 / 5e-28 AT3G52440 167 / 7e-51 Dof-type zinc finger DNA-binding family protein (.1) Potri.001G238400 [exp] 107 / 2e-27 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.010G205400 [exp] 107 / 2e-27 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10007976 pacid=23162278 polypeptide=Lus10007976 locus=Lus10007976.g ID=Lus10007976.BGIv1.0 annot-version=v1.0 ATGCAAGACATCCACTCAATTGGCGGGGGGGGGGCGGGGAGGGGGAGGTGCGATTCCAGCAACACCAAATTCTGTTACTACAACAACTACAACCTCTCAC AGCCGCGCCACTTCTGCAAAGGCTGCCGCCGTTACTGGACGAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGAGGAGGCTGCCGCAAGAACAAGCGATC TAAGAAGCTGACGAATGATTCTTCCGCCTCTTCCAACATCTCCACCACTGCGCCGCGAGATCAGCCGAAGAAGTCCGATCCGAATGATCACTCCAGCAGC GAAAGCTCAAGCCTTTCTGCGTCGGCGGCGGTGGAGGCCGTACATTCCTCAACCTCTGCTTCCGATTTGAACAAAGGTACTAAGAACCACGATGTACTGA ATAGAATCGGGGAATCGAAGCTGTTCGACGGCTTCGAAACGGCGGCGGACTGCGGGATCTTTCAGGAGATCGGGAGCTTTACGAGCTTGATCGGGTCGTC AGCTGATACTCTGCCGTTTGAATTCGCCGGGACGACGCCGGTTGAGCAGGGGATGGGGTTGATTGATCAGACGGCTATGGGGAATAGTAGATCAAGGAGT GGTGGAGGATTTGGGGCGTTGGATTGGGAAGAGACCGGAGATGGTTCAGGTTCGGCAGCGTTGTTCGATCTGCCTAGCGCCGTTGATCAAGCGTACTGGA GTCAGAGCCAGTGGACAACCAACGGTCAAGATCCGTCGGCTGGTCTTTACCTCCCCTAG
AA sequence Show only first row Show all	>Lus10007976 pacid=23162278 polypeptide=Lus10007976 locus=Lus10007976.g ID=Lus10007976.BGIv1.0 annot-version=v1.0 MQDIHSIGGGGAGRGRCDSSNTKFCYYNNYNLSQPRHFCKGCRRYWTKGGVLRNVPVGGGCRKNKRSKKLTNDSSASSNISTTAPRDQPKKSDPNDHSSS ESSSLSASAAVEAVHSSTSASDLNKGTKNHDVLNRIGESKLFDGFETAADCGIFQEIGSFTSLIGSSADTLPFEFAGTTPVEQGMGLIDQTAMGNSRSRS GGGFGALDWEETGDGSGSAALFDLPSAVDQAYWSQSQWTTNGQDPSAGLYLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10007976 [exp]	0	1
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10036873 [exp]	2.4	0.9284
AT4G15248	CO		B-box type zinc finger family ...		Lus10039694 [exp]	2.6	0.9411
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003399 [exp]	2.8	0.9387
AT1G60420			DC1 domain-containing protein ...		Lus10005618 [exp]	4.5	0.8919
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10006224 [exp]	5.1	0.9085
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10007905 [exp]	6.0	0.9280
AT4G34630			unknown protein		Lus10017493 [exp]	7.3	0.8852
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10040428 [exp]	7.4	0.9265
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040528 [exp]	11.0	0.9202
AT4G22580			Exostosin family protein (.1)		Lus10004341 [exp]	11.0	0.9130

Compare expression of checked genes

Lus10007976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.