Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013504 [exp] 122 / 2e-36 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007977 pacid=23162292 polypeptide=Lus10007977 locus=Lus10007977.g ID=Lus10007977.BGIv1.0 annot-version=v1.0 ATGAACAGTGCAGGGGTGGTGGACGAATCCAGGGGAATGGATTTCTTGCTTGTTCGGTTCCCAAATCCCGTCACCATTAAGACGAGGAGGAAGAATTGTA GAAACGGTATCGATCATCACAGCGACGGTTCGACCGTGCCACCGGAGAAGAAGGATGATCATCATGATGATGAGTACATCGAATTCTGCTTCAAACGAGA TGGGGAATTCGAAGTTGTCAGCGACATTGCACCTCAGCCCACTGCTGACAGCACAAAGATTGAAGTGGGGAGAGATGGTGGGGAGTCCAGTGCCAATGCC GAAAGCAGAAGCACCAGACAAGAAGAAGAATTACAGCAGAGGAAACAGAGGATTAACCGTGGTCGTTTCCGGCAGTGTTGGAGATTATGA
AA sequence Show only first row Show all	>Lus10007977 pacid=23162292 polypeptide=Lus10007977 locus=Lus10007977.g ID=Lus10007977.BGIv1.0 annot-version=v1.0 MNSAGVVDESRGMDFLLVRFPNPVTIKTRRKNCRNGIDHHSDGSTVPPEKKDDHHDDEYIEFCFKRDGEFEVVSDIAPQPTADSTKIEVGRDGGESSANA ESRSTRQEEELQQRKQRINRGRFRQCWRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007977 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005594 [exp]	6.8	0.9096
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10011345 [exp]	23.2	0.9066
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Lus10005854 [exp]	28.0	0.9011
AT5G65660			hydroxyproline-rich glycoprote...		Lus10028220 [exp]	28.6	0.9018
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10023918 [exp]	34.0	0.8858
					Lus10043397 [exp]	37.5	0.8975
					Lus10006284 [exp]	37.6	0.8974
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000958 [exp]	38.5	0.8454
AT1G67910			unknown protein		Lus10023632 [exp]	40.4	0.8973
AT5G58880			unknown protein		Lus10005869 [exp]	45.7	0.8652

Compare expression of checked genes

Lus10007977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.