Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08110 1231 / 0 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1) AT1G27880 73 / 1e-12 DEAD/DEAH box RNA helicase family protein (.1) AT3G18600 61 / 3e-09 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27680 52 / 3e-06 RECQSIM RECQ helicase SIM (.1) AT5G54910 45 / 0.0003 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013505 [exp] 975 / 0 AT5G08110 451 / 3e-141 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1) Lus10004503 [exp] 53 / 1e-06 AT5G27680 912 / 0.0 RECQ helicase SIM (.1) Lus10026219 [exp] 46 / 0.0002 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10019129 [exp] 45 / 0.0002 AT5G27680 109 / 9e-27 RECQ helicase SIM (.1) Lus10042451 [exp] 45 / 0.0005 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10029596 [exp] 44 / 0.0008 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G063500 [exp] 1536 / 0 AT5G08110 1190 / 0.0 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1) Potri.012G063201 [exp] 243 / 3e-74 AT5G08110 183 / 5e-54 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1) Potri.012G063000 [exp] 89 / 6e-21 AT5G08110 56 / 2e-10 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1) Potri.013G158000 [exp] 56 / 2e-07 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G026400 [exp] 52 / 3e-06 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.009G045300 [exp] 49 / 3e-05 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G423300 [exp] 48 / 4e-05 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.013G161200 [exp] 44 / 0.001 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] PF09369 [flax] [poplar] DUF1998 Domain of unknown function (DUF1998) CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10007978 pacid=23162289 polypeptide=Lus10007978 locus=Lus10007978.g ID=Lus10007978.BGIv1.0 annot-version=v1.0 ATGGCGCAGGAAGAGCAAATGAAGATCGAAGTTCGCGCGCTCAGTGGAGAATCAATCGTCGTTAGCGTATCGAGAAACAAGACGGTTGACGACTTGAAGC GCCTGCTGGTTCTCGACTTCTCCCCCTCTGCTATTTCTACTTCCCCAAATTTCCATCTTTTCTTCAAGGGTGTTAAATTAAGCTTGAATGGTTCATTATC CACGCTTGTGATTCAAGATGGTGAATTCCTGGTACTAATTCCTTTTGTTAAGAAGGATAAGAAACTGGCTTCAAAACTGGATTACTCGATGCCTGAGCAG CGAAAAAGTCCGATCTCAAGCTTTGCTGATGCTGCATATTCGGATATGATTCAGGACTTGTCATCTATGGTTAGTGAATCGAGCAGGGTCAGCGAGGAGG AATGTGATGGTGCATTTTCTGGGAACAAACGTAAAAGGAATAATCCAGAGAGTGACGTTGAGGGACTAGTGTATGATTTTGTTTCGAATGTGTTGCGGTC TCCGAACAAGAACATTGCCGATGGGGAGAACTGCGAGAAGTTCGTGGAGGTTTTGGAATCGATGAGTTGTTTGACTGTTGTGCATTCGGGGAAGTGCATG TTGTTGGCTGCTTCAGCTAATGCTGGCAGTGTGGGAAGAGACGAGGGCGTTTCGTGCTTGTGTCCCGTGTGGTTGAGAAGAGTTATGCAGGCTTTTGGTT TTCTGAATGTTTATGGTTCATTTCTAAGTGTGCAAAGAGAGGAAATCACGTCCTCTTGTTTGGAGGAGGCGTTGATGCAGCTTAGTAAGTTCGGGTTTAA GGTTTGTTTTGAAGATGTGAAGCACCTTTCTGTCCTTTGTCCTAAGGTAGTAATCTTCGCTGATGATGATACTATGCGGGATAATTCTGCTCTGGCCCTT GTTGTTGTCATAAATTCTGACAGAGAACATAGAGATGAGATAGGAAAGGATCATGGAAATGGCAGGAAAGCTATTTCCTTATCGAGGATGCTCACTGCCT TGAGAAAACGTGAGAGCTTATTCAAAACTTATGTGTGTGAAGCAATTAGGACATTGATGGGTAAAAGTGGTAATGCACTGGAGATTACGTTCTCCTTGGA TGATCTACTAACATTTCTGAAGGAAGGTGGGATTCCTTGGAGTGAAGATCATAAGAAATCAACAAAGAAAAGCTGGACATCATCTTCAAGCTCTCATTCA TGCCAATCACGATGTTGTGAGACAAATCAGTTGTTGCCGATGGAAATGGTCCAACATCTTCAAAAGGGGATGGGTTCCGATGGCCAGGTGGTGCACGTTG AACAGATTAGAGCAAGGAAAGCTCAGTATGTGGATATTCCTGCTGAACTCTCAAACGATACAAAATCTCTTTTGAAATGCATGGGGATCAACAAACTGTA TAGCCATCAGGCGGAATCTATTATGACCTCCCTGAAGGGGAAGAATGTTGTGGTGGCAACGATGACATCTAGCGGAAAATCTCTTTGCTACAATGTTCCT GTTCTGGAAGTATTGTTCAAGGATTTGCTGTCATGTGCTCTGTACTTGTTTCCAACGAAGGCGTTAGCTCAAGATCAGCTGAGAGCATTGCAGACTATGA CAAAAGCCTATGACACAAGCATAAACATTGGTGTATATGATGGCGACACATGTCAGAGCGATAGAATGTTGCTTCGGTCGGATGCTAGACTGTTGATTAC AAATCCAGACATGTTACACATGTCGATTTTGCCTCATCATGGGAAATTTAGTAGAATCTTAGCAAATCTCAGGTTTGTGATTATTGATGAAGCTCATACG TATAAGGGGGCATTTGGATGTCATACCTCTCTCATACTGAGAAGACTTCGCCGCTTATGTTCTCATGTCTATGGTACCGATCCTTCTTTTATATTCTCTA CGGCAACTTCTGCCAACCCCAGGGAGCATTGCATGGAGCTTGCAAATCTGTCAACATTGGAGCTAATTCAAAATGACGGGAGCCCTTCTGCTGAAAAGCT TTTTGTCCTTTGGAATCCTTCTTCTCTTAGATATTTTGCTAACATAAGTAGCTTACAGGTGCAAAATGATTGTGAAACTGGTATGGATATCAACGGTTCT GCAGATAAAAGCATAAGCCCAATCTTCACGGTCTCGTACCTCTTCTCTGAGATGGTTCAGCATGGACTTCGGTGTATTGCCTTTTGCAAGTCGCGCAAGC TTACAGAGCTTGTTCTCTCCTATACGCGTGAAATTCTTCAAGAGACCGCTCCTAACCTCGTAGATCGAATATCTGCATATCGAGCTGGTTACGTTCCTGA GGAGCGGAGGAAAATTGAGAGGGATTTCTTCAGTGGAAAGCTTTCTGGCATTGCGGCAACGAATGCTCTCGAGCTAGGAATTGATGTTGGACATATTGAC GCCACACTGCACCTAGGCTTTCCTGGTAGCATTGCTAGCCTATGGCAACAGGCAGGCAGGTCAGGGAGAAGAGAGAAGGCATCCATTGCTGTGTATGTTG CTTTTGAAGGGCCTCTTGATCAGTATTTCATGAAATGTCCAAGAAAGCTCTTCGATAGTCCCATTGAGTGCTGCCATGTTGATTCTCAGAACGTGCAGGT GCTTGAACAGCATCTTACCTGTGCTGCTTTCGAATGTCCACTGAGTTTGCAGTATGACAAGAACCATTTTGGTCCCGGGCTGGATTCTGCTGTGATGTCG CTTAGAAATAAAGGATTCATAACTTGTAATCTGACCGATGATCACTCTGCCAGAATATGGAGCTACATTGGAAAGGAGAAATCACCTTCGCGTGAAGTTG GCATCCGAGCTATAGAAACTATCAGATATAAGGTGATAGAAACTCAGCAGAATGAGCTTCTTGAAGAGATTGAGGAAAGCAAGGCTTTCTTTCAGGTCTA TGAAGGTGCAATCTATCTGCACCAGGGAAAGGCTTATCTGGTCAAAGAGCTCGATATATCGGAGAAGGTTGCTTGGTGCCAACTTGCTAATGTGGACTAC TATACGAAAACTCGAGACTATACAGACGTCCTTGTCATGGGAGGTGATGCCGCATATCCAGTGAGAGCTAGCAACCAGCCTAAAAGAACAACAGCTCAAG CACGTTCTTGCAAAGTAACAACCACCTGGTTTGGATTCCGTCGCATGGCTAGAGGAAGCAACAAAGTCATAGACACAGTTGATCTTTCATTGCCCAGCTA CTCCTACGAATCACAGGCTGCTTGGATTGGAGTTCCTCAATCGCTTAAGAAATTGGTTGAGGACAGTGGATTTTCGTTTCGTGGTGGGCTGCATGCTGCT TCTCATGCTCTTCTCAATGTGGTGCCTTTATATGTGCGGTGCAATTACTCGGACTTGGCTCCAGAATGCCCAAACCCTTATGACACTCGCTATTTCCCTG AAAGAATTCTGGTATATGATCAGCATCCCGGAGGAACTGGTGTCTCAAAGCAGATACAACCGTATTTCACTGCGATTCTGACTGCAGCACTGGAGCTTCT CACGTCATGCCACTGCCACGGATACACTGGCTGCCCAAACTGTGTTCAGAGTGTAGTCTGTCATGAGTACAACGAGGTGATCCACAAGGAAGCAGCCATT ATGATCATTAAGGGTGTGCTGGATGCAGAGAAGTCGTACTTCGAGGAACTTGACAAATCTTCTTGA
AA sequence Show only first row Show all	>Lus10007978 pacid=23162289 polypeptide=Lus10007978 locus=Lus10007978.g ID=Lus10007978.BGIv1.0 annot-version=v1.0 MAQEEQMKIEVRALSGESIVVSVSRNKTVDDLKRLLVLDFSPSAISTSPNFHLFFKGVKLSLNGSLSTLVIQDGEFLVLIPFVKKDKKLASKLDYSMPEQ RKSPISSFADAAYSDMIQDLSSMVSESSRVSEEECDGAFSGNKRKRNNPESDVEGLVYDFVSNVLRSPNKNIADGENCEKFVEVLESMSCLTVVHSGKCM LLAASANAGSVGRDEGVSCLCPVWLRRVMQAFGFLNVYGSFLSVQREEITSSCLEEALMQLSKFGFKVCFEDVKHLSVLCPKVVIFADDDTMRDNSALAL VVVINSDREHRDEIGKDHGNGRKAISLSRMLTALRKRESLFKTYVCEAIRTLMGKSGNALEITFSLDDLLTFLKEGGIPWSEDHKKSTKKSWTSSSSSHS CQSRCCETNQLLPMEMVQHLQKGMGSDGQVVHVEQIRARKAQYVDIPAELSNDTKSLLKCMGINKLYSHQAESIMTSLKGKNVVVATMTSSGKSLCYNVP VLEVLFKDLLSCALYLFPTKALAQDQLRALQTMTKAYDTSINIGVYDGDTCQSDRMLLRSDARLLITNPDMLHMSILPHHGKFSRILANLRFVIIDEAHT YKGAFGCHTSLILRRLRRLCSHVYGTDPSFIFSTATSANPREHCMELANLSTLELIQNDGSPSAEKLFVLWNPSSLRYFANISSLQVQNDCETGMDINGS ADKSISPIFTVSYLFSEMVQHGLRCIAFCKSRKLTELVLSYTREILQETAPNLVDRISAYRAGYVPEERRKIERDFFSGKLSGIAATNALELGIDVGHID ATLHLGFPGSIASLWQQAGRSGRREKASIAVYVAFEGPLDQYFMKCPRKLFDSPIECCHVDSQNVQVLEQHLTCAAFECPLSLQYDKNHFGPGLDSAVMS LRNKGFITCNLTDDHSARIWSYIGKEKSPSREVGIRAIETIRYKVIETQQNELLEEIEESKAFFQVYEGAIYLHQGKAYLVKELDISEKVAWCQLANVDY YTKTRDYTDVLVMGGDAAYPVRASNQPKRTTAQARSCKVTTTWFGFRRMARGSNKVIDTVDLSLPSYSYESQAAWIGVPQSLKKLVEDSGFSFRGGLHAA SHALLNVVPLYVRCNYSDLAPECPNPYDTRYFPERILVYDQHPGGTGVSKQIQPYFTAILTAALELLTSCHCHGYTGCPNCVQSVVCHEYNEVIHKEAAI MIIKGVLDAEKSYFEELDKSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08110			nucleic acid binding;ATP-depen...		Lus10007978 [exp]	0	1
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10014796 [exp]	3.2	0.8758
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Lus10036447 [exp]	4.9	0.8296
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10027289 [exp]	7.2	0.8463
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Lus10005032 [exp]	7.6	0.8658
AT1G55750			BSD domain (BTF2-like transcri...		Lus10007089 [exp]	7.9	0.8241
AT3G25610			ATPase E1-E2 type family prote...		Lus10035069 [exp]	8.7	0.7424
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	8.9	0.8123
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10011299 [exp]	10.2	0.8524
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10000866 [exp]	10.4	0.8222
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10016691 [exp]	11.4	0.7896

Compare expression of checked genes

Lus10007978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.