Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18580 808 / 0 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 556 / 0 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT5G47780 456 / 5e-155 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 441 / 4e-148 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 420 / 5e-140 GAUT3 galacturonosyltransferase 3 (.1.2) AT3G25140 376 / 2e-124 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G46480 351 / 3e-115 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G02350 351 / 1e-114 GAUT9 galacturonosyltransferase 9 (.1) AT3G01040 310 / 2e-99 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G15470 307 / 5e-98 GAUT14 galacturonosyltransferase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013506 [exp] 1017 / 0 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1) Lus10018554 [exp] 572 / 0 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10041389 [exp] 452 / 5e-153 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 449 / 1e-151 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 449 / 5e-150 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 441 / 3e-148 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10026546 [exp] 432 / 4e-140 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 415 / 3e-129 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011834 [exp] 375 / 5e-124 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060800 [exp] 862 / 0 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.012G064500 [exp] 841 / 0 AT1G18580 846 / 0.0 galacturonosyltransferase 11 (.1) Potri.019G108900 [exp] 552 / 0 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.013G146200 [exp] 540 / 0 AT2G20810 820 / 0.0 galacturonosyltransferase 10 (.1) Potri.016G001700 [exp] 457 / 1e-154 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 451 / 5e-152 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 443 / 6e-149 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 436 / 3e-146 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.006G001100 [exp] 423 / 2e-142 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G246500 [exp] 386 / 1e-128 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10007979 pacid=23162296 polypeptide=Lus10007979 locus=Lus10007979.g ID=Lus10007979.BGIv1.0 annot-version=v1.0 ATGCGGAGGCGGGCGGCCGAGTACCGCCGGCCGGTTAGGAGGAGGTATTCGCATTGGATCTGTGTGCTTCTCGGCATGTTCCTGATTGCCGGATTGGTTT TGTTCGTCTTCCATCATAACCAGCGCGAAGATCGCGTCGAGCATCTCATGATGGAGAGAAAGTCACGATCGGAGCTGGATAATCGCGAAAGCTTCAACTT CACCAAAGATATACTAAGCCCCACCTCATATTCCAGACAATTAGCCGAGCAAATGATACTCGCCAAGGCATTCGTCATCATCGCAAAGGAGCACAACAAT CTCCACCTTGCTTGGGAGCTAAGCAAACGGATCCGCAGCTGCCAGCTCTTACTCTCAAAAGCAGCAATGAGAGGAGAGCCGATATCACCACAAGAAGCTG AGCCGGTGATCAGCAGTCTATCCTATCTAATCTTCAAGGCTCAAGACGCGCACTATGACATTGCAACCACCATGATGACGATGAAGTCCCATATCCAGGC CCTCGAAGAACGTGCAAACGCAGCGACAGTACAGAGCACGGTTTTCGGACAGCTCGTGGCCGAAGCTCTCCCCAAGAGCCTCCATTGCCTGAAACTAAAG CTCACAACTGATTGGCTCTCGAAACCCCCCCTGAAAGCTCTCGCAGAGGAAAATACAAACTCTCCTCGAGTTTCGGATAACAACCTCTACCATTTCTGCG TCTTCTCGGATAACGTTCTGGCTACATCAGTGGTTGTCAATTCCACAGTCTCGAATGCTGATCATTCGAAGCAGCTCGTTTTCCATATCGTCACGAATGG AGTCAGCTTCGGAGCAATGCAGGCGTGGTTTTTGACTAACGACTTCGGAGGAGCTACTGTTGAAGTACAGAACATCGAGGAGTTCCGGTGGCTGAATGTT TCGTACGCTCCCGTCGTGAAACAGCTGCTGGATAAAGACTCCCGCGATTTCTATTTCGGAAAGTACGAGAACGAGAAAGTCGAGACGAAACTGCAGAACT CAAAGTACTTGTCTTTACTGAACCACCTCCGGTTTTACATCCCAGAGATCTATCCCCAGCTGGAGAAGATTGTGTTCCTCGACCATGATGTGGTAGTCCA GAAAGATCTGACGCAGTTATTCTCTCTCGATCTTCACGGAAACGTGAACGGAGCTGTGGAGACCTGCCTCGAGTCGTTCCATCGTTACTACAAGTATCTC AATTTCTCGAACCCGGTCATTAGCTCGAAGTTCGACCCTCAGGCGTGCGGGTGGGCGTTCGGTATGAACGTGTTTGATTTGATAGAGTGGAGGAAGGCTA ACGTCACCGGACAGTACCATTTTTGGCAGGATCGGAACGTGGACCGCACGTTATGGAAGCTTGGGACGCTCCCGCCTGCTCTGCTGGCGTTTTATGGCCT GACGGAGCCACTCGATCGGAGGTGGCACGTGTTGGGATTGGGTTATGATATGAACATCGATGACCGGCTGATCGAGAGTGCTGCGGTGATCCATTTCAAT GGGAATATGAAGCCATGGCTGAGACTTGGGATTGGCAGGTATAAGCCTCTGTGGGAAAGGTACCTAAACCAGAGCCACCCTTATTACAGAGATTGTGTCA CCAGTTAG
AA sequence Show only first row Show all	>Lus10007979 pacid=23162296 polypeptide=Lus10007979 locus=Lus10007979.g ID=Lus10007979.BGIv1.0 annot-version=v1.0 MRRRAAEYRRPVRRRYSHWICVLLGMFLIAGLVLFVFHHNQREDRVEHLMMERKSRSELDNRESFNFTKDILSPTSYSRQLAEQMILAKAFVIIAKEHNN LHLAWELSKRIRSCQLLLSKAAMRGEPISPQEAEPVISSLSYLIFKAQDAHYDIATTMMTMKSHIQALEERANAATVQSTVFGQLVAEALPKSLHCLKLK LTTDWLSKPPLKALAEENTNSPRVSDNNLYHFCVFSDNVLATSVVVNSTVSNADHSKQLVFHIVTNGVSFGAMQAWFLTNDFGGATVEVQNIEEFRWLNV SYAPVVKQLLDKDSRDFYFGKYENEKVETKLQNSKYLSLLNHLRFYIPEIYPQLEKIVFLDHDVVVQKDLTQLFSLDLHGNVNGAVETCLESFHRYYKYL NFSNPVISSKFDPQACGWAFGMNVFDLIEWRKANVTGQYHFWQDRNVDRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDDRLIESAAVIHFN GNMKPWLRLGIGRYKPLWERYLNQSHPYYRDCVTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	0	1
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032190 [exp]	1.4	0.9642
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	1.4	0.9612
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	2.2	0.9491
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10037588 [exp]	2.6	0.9411
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Lus10006076 [exp]	2.8	0.9401
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	2.8	0.9509
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	3.5	0.9419
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10019477 [exp]	3.7	0.9347
AT4G12650			Endomembrane protein 70 protei...		Lus10016072 [exp]	3.9	0.9545
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10002440 [exp]	4.2	0.9400

Compare expression of checked genes

Lus10007979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.