Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06720 648 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G42440 87 / 5e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013507 [exp] 1108 / 0 AT1G06720 1225 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030752 [exp] 87 / 4e-17 AT1G42440 1069 / 0.0 unknown protein Lus10013232 [exp] 85 / 3e-16 AT1G42440 1082 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G017700 [exp] 1302 / 0 AT1G06720 742 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G250100 [exp] 87 / 5e-17 AT1G42440 1075 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain CL0575 [flax] [poplar] EFTPs PF04950 [flax] [poplar] RIBIOP_C 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal CL0575 [flax] [poplar] PF08142 [flax] [poplar] AARP2CN AARP2CN (NUC121) domain
Representative CDS sequence Show only first row Show all	>Lus10007980 pacid=23162333 polypeptide=Lus10007980 locus=Lus10007980.g ID=Lus10007980.BGIv1.0 annot-version=v1.0 ATGGCGATGAACTCCGGCGGGAAGGAACAGCCTCACAAATCTCATCGCTCCAGTCAGGCGGGCGCTTCTTATAGAAAGAAGAAGAAACCCAAGGATGGGG GAGCGAAGAAGAGAAAGCGTGAGGACGGTCGTGCTGCAATGGAAACGAAGGATAAGCCTAAGCCGTGGACGAAGGCGGACAAGGTGGACACGAAAAAGAA GCGGCGGCTCGGCGAGGACAGTGATCTAGCGGAGCAGAAGAGGCAGAATCCTAAGGCTTTTGCGTTTTCATCTGGCGGGAAAGCCAAGAAGCTGCAGTCG CAGGCTGCTGAGAAAGAACAGCGGAAGCTTCATATTCCAACTATTGATCGGACTTACGGCGAGCCAGCTCCTTATGTTGTTGTTGTCCAGGGGCCGCCTA AGGTGGGGAAGTCTCTTTTGATAAAATCTCTTGTTAAGCATTACACTAAGCATAATCTACCGGAGGTTCGAGGCCCGATTTCTATTGTGTCAGGGAAGAA GAGAAGGGTTCAGTTTGTGGAATGCCCGAACGATATCAATGGCATGATAGATGCTGCGAAGTATGCTGATCTCGCTTTGCTTTTGATTGATGGAAGTTAC GGCTTTGAGATGGAAACGTTTGAGTTTCTCAATATCTTGTTCGTTCATGGGTTTCCTAAGATCATGGGAGTCCTGACTCACCTTGATGAATTTAAAGATG TGAAGAAATTGAAGAAAACAAAAGAGAAACTTAAGCGGCGTTTCTGGGCAGAAACATATGATGGTGCAAAGTTGTTCTATTTGTCTGGGCTGCAGCATGT GAGGTACACTAAACGGGAGGTTCACAATCTTGCTCGGTTTATTTCTACCAAAAAATTCCACCCATTATCTTGGAGAACTTCTCATCCATATGTTTTAGTT GATCGATTTGAAGATGTTACACCACCTGAAAGAGTGCAGATGAACAGTAAGTGTGACAGGAATGTGACTCTGTACGGCTATTTGCGGGGTTGCAACTTGA AACGAGATATGAAGGTTCATATTGCTGGAGTTGGTGACTTCAGTTTGGCCGGTGTCAATGCATTGCCTGATCCTTGCCCGCTGCCTTCAGCTGCCAAAAA AAAGGGATTGCGTGACAAGGAAAAATTATTCTATGGTCCAATGTCTGGGCTCGGTGACCTACTTTATGACAAAGATGCTGTTTATATAAACATAAATGAC CATTTCGTTCAGTACTCTAAACCCGACGAAGAAGGTGGGGAAACAGGAAAGAAGCAAGATGTGGGAGAAGTTTTGATGAAATCCCTCCAGAACACAAAAT ACTCAATTGATGAGAAGTTACAGGAAAGCTTCATTTCCCTTTTCAGTAGAGACAAAACTGTGACACCTGGACAAGTGAAAAGCGATCAAGATAATAGCAA AAATGAGGATCATATGCTTGAGTCAGAAGCTTTAAAACAAAATGACCTGGCTGATGAAGCTGAACCTCATGGCCCCAGCGAAAGTGATGCTGAGGATTCT GATGGTTCAGCATCCTCAGGTGAAAGTCCTGCTGCTCCGGGGAAGCAAGATTATACAGAGCAAGTTGAGCTTCACGCGGGGAGGTTAAGAAGAAAAGCAG TATTTGAAAATGATACAAATGACGTAGAGGAGGAGTCCGACGATGACAGTCAAAATGATGATGGTGACTTGAAAAGTCAAGATGATGATGCATCATACTC GGGTTCAGATTCCTCGGAGGAAGATGAGGATATTGAAGAACCTGATGATTATATGGGAAATTCTTCAAGGTGGAAAGAATCATTGATGGAAAGGACTGCA TCAAGGAAACGTATAAATCTCATGCAACTTGTCTATGGTACATCTGCATCTCTGAAGGAGAGAGATGTTAATCAGAATCAAGATGCCAGCGACAATGAAG AAAGTGATGGCGATGACTTCTTTAAGCCGAAAGGGGAAGGCAACAAGAAACAAAATGGTCAAGATGGTGGCTACTTTGATGCGGAAGATTGTTCCAAATT TTTTATGCATACTGGCCCGAAAAATTGGAAGGAGGCCAGCATATATGAGAATATTCGTGATCGATTTGTCACAGGCGATTGGTCGAATGCTGCCCGGAGG AATACACTTTCTTCAGGTAAGGCTGAAATTGGCAGTTCCAATGATGATGAGGATGAGATTGCAGATGGTGAGTTTGAAGACTTAGAAACTGGCCAGAAAT ATGGGAGCACTCAAAAAGCTGAACAGGATGATGATGATGGTGAAAAAGAAGAGAGGAGGTTGAAGAAGCTAGCACTTCGTGCAAGATTTGACACTCAATA TCCTTTTCAGCAATTAATTGCTTATATTAATGTCAAAATAGTCCGCAACAAAAGTGAAGCTAAAGGGAGTTCGTTTATTGACAAGTTGAAGGAGGAGACT GACTTAAGGAAGCAGAAGAACATAGCTGAATTAAATGAACTGGATGAAGAAGCTCGAATATCAATAGAGGGCTTCAGAACTGGGACATATGTGAGATTGG AGATTCATAACGTTCCGTGCGAGATGGTTGAGTATTTTGACCCGTTTCATCCAACTTTAGTTGGTGGAATAGGTTTCGGCGAGGAAAATGTCGGATATAT GCAGGCCAAGCTAAAACGGCACAGATGGAGCAAAAAGATTCTAAAGACTAATGATCCTATAGTTTTATCTATCGGTTGGAGACGGTACCAAACTAGACCA GTTTATGCAATTGAGGATAGTAATGGACGGCATCGGATGGTGAAGTACACTCCTGAGGAAATGCACTGTCTTGCCATGTTTTGGGGGCCTCTAGCTCCTC CAGACACTGGTGTGATTGCTGTGCAAAGTGTTTCCAATAACCAGGCATCATTTAGGATTAGTGCCACTGCCACTGTTCTCGAGTCCAATCATGCTTCCAA GATAATGAAGAAACTAAAGTTGGTTGGATACCCATGCAAGATTTTCAAGAAGACTGCACTTATAAAAGACATGTTCACTTCAAATCTCGAGGTAGCCAAG TTTGAAGGCGCTCCTGTAAGAACAGTTAGTGGCATTCGAGGACAAGTGAAAAAGGCTGCAAAAGAGGATCTTGGTGGCCATTCCAAAACCAAAGGAGAAA AGCCGAAAGAGGGGATTGTCCGCTGTACCTTTGAGGACAAGATTTTGATGAGCGACATTGTGTTCTTGCGTACGTTTATTTCAGTCGACGTTGAACAATA TTATAACCCGTTGACCACAGCTTTACAACCACGTAATGCCGTTTGGCAAGGAATGAAGACCATGGCTGAATTGAGGAGGGAGAATCACATACCGGTGCCG GTTAAGAAAGATTCCGAGTACAAGCCGATCGAACGGACTCTAAGGAAGTTCAATCCGCTGGTGATTCCCAAGTCATTGCAAAATGCTCTGCCATTTGGAA CGAAACCAAAGGACACTTCACATCGGAAGAAGCCTAATGTCGAAAGTAAAAGAGCCGTTGTCGTGGAGGGCCGCGAGAGACAAGTCCATACTCTTGTTCA GCACCTCCAGTTCATTAGAAACGACAAGATGAAGAGGCGGAAACTGAAAGAAAATCAGAACAGAAAGCAGCACGCAAAGGAGGAAGCGAAAGCTGAAGAA GTGTCGAAGAAGAGGAGAAGAGAAGAACGGCGGGAGAAGTACAGGAAGGAAGATAAGGTGAAGAAGAGAGCCAGAAGAAAGGCTGATTATTGA
AA sequence Show only first row Show all	>Lus10007980 pacid=23162333 polypeptide=Lus10007980 locus=Lus10007980.g ID=Lus10007980.BGIv1.0 annot-version=v1.0 MAMNSGGKEQPHKSHRSSQAGASYRKKKKPKDGGAKKRKREDGRAAMETKDKPKPWTKADKVDTKKKRRLGEDSDLAEQKRQNPKAFAFSSGGKAKKLQS QAAEKEQRKLHIPTIDRTYGEPAPYVVVVQGPPKVGKSLLIKSLVKHYTKHNLPEVRGPISIVSGKKRRVQFVECPNDINGMIDAAKYADLALLLIDGSY GFEMETFEFLNILFVHGFPKIMGVLTHLDEFKDVKKLKKTKEKLKRRFWAETYDGAKLFYLSGLQHVRYTKREVHNLARFISTKKFHPLSWRTSHPYVLV DRFEDVTPPERVQMNSKCDRNVTLYGYLRGCNLKRDMKVHIAGVGDFSLAGVNALPDPCPLPSAAKKKGLRDKEKLFYGPMSGLGDLLYDKDAVYININD HFVQYSKPDEEGGETGKKQDVGEVLMKSLQNTKYSIDEKLQESFISLFSRDKTVTPGQVKSDQDNSKNEDHMLESEALKQNDLADEAEPHGPSESDAEDS DGSASSGESPAAPGKQDYTEQVELHAGRLRRKAVFENDTNDVEEESDDDSQNDDGDLKSQDDDASYSGSDSSEEDEDIEEPDDYMGNSSRWKESLMERTA SRKRINLMQLVYGTSASLKERDVNQNQDASDNEESDGDDFFKPKGEGNKKQNGQDGGYFDAEDCSKFFMHTGPKNWKEASIYENIRDRFVTGDWSNAARR NTLSSGKAEIGSSNDDEDEIADGEFEDLETGQKYGSTQKAEQDDDDGEKEERRLKKLALRARFDTQYPFQQLIAYINVKIVRNKSEAKGSSFIDKLKEET DLRKQKNIAELNELDEEARISIEGFRTGTYVRLEIHNVPCEMVEYFDPFHPTLVGGIGFGEENVGYMQAKLKRHRWSKKILKTNDPIVLSIGWRRYQTRP VYAIEDSNGRHRMVKYTPEEMHCLAMFWGPLAPPDTGVIAVQSVSNNQASFRISATATVLESNHASKIMKKLKLVGYPCKIFKKTALIKDMFTSNLEVAK FEGAPVRTVSGIRGQVKKAAKEDLGGHSKTKGEKPKEGIVRCTFEDKILMSDIVFLRTFISVDVEQYYNPLTTALQPRNAVWQGMKTMAELRRENHIPVP VKKDSEYKPIERTLRKFNPLVIPKSLQNALPFGTKPKDTSHRKKPNVESKRAVVVEGRERQVHTLVQHLQFIRNDKMKRRKLKENQNRKQHAKEEAKAEE VSKKRRREERREKYRKEDKVKKRARRKADY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06720			P-loop containing nucleoside t...		Lus10007980 [exp]	0	1
AT1G06720			P-loop containing nucleoside t...		Lus10013507 [exp]	1.0	0.9648
AT5G17270			Protein prenylyltransferase su...		Lus10030019 [exp]	1.4	0.9422
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	5.7	0.9413
AT2G40360			Transducin/WD40 repeat-like su...		Lus10011471 [exp]	6.9	0.9351
AT5G11240			transducin family protein / WD...		Lus10033468 [exp]	7.5	0.9245
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	8.9	0.9350
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	9.8	0.9086
AT1G63810			unknown protein		Lus10026014 [exp]	9.8	0.9306
AT1G30240			unknown protein		Lus10014364 [exp]	11.8	0.9115
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	13.7	0.9214

Compare expression of checked genes

Lus10007980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.