Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29680 516 / 0 Alkaline-phosphatase-like family protein (.1) AT4G29690 471 / 3e-164 Alkaline-phosphatase-like family protein (.1) AT4G29700 463 / 5e-161 Alkaline-phosphatase-like family protein (.1) AT4G29710 153 / 6e-45 Alkaline-phosphatase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034660 [exp] 603 / 0 AT4G29680 558 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10008562 [exp] 526 / 0 AT4G29680 699 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10032681 [exp] 525 / 0 AT4G29680 699 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10017872 [exp] 247 / 3e-80 AT4G29680 243 / 6e-79 Alkaline-phosphatase-like family protein (.1) Lus10000041 [exp] 209 / 2e-66 AT4G29700 204 / 2e-64 Alkaline-phosphatase-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G150900 [exp] 527 / 0 AT4G29680 703 / 0.0 Alkaline-phosphatase-like family protein (.1) Potri.018G066600 [exp] 516 / 0 AT4G29680 678 / 0.0 Alkaline-phosphatase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF01663 [flax] [poplar] Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10007981 pacid=23162282 polypeptide=Lus10007981 locus=Lus10007981.g ID=Lus10007981.BGIv1.0 annot-version=v1.0 ATGGCTAATCACTCTAGCCAATTAGTACCACCACAACCAAATCAAACCACTTCTCTTCCACCTAACCAAAAAACTAACTCGGATTATTCGAACCCACTCA TCTTCTATTCAGCTTTCATTTTCCTAACCTTTATCTCCCTATTCACCACATCTAATGCTTCCAGTGAAAGAATCTCCACGAGTTTTCGACGACCCAAACC GAAACTTCCCCGACCGGTCGTGATCATGGTCTCGGCTGACGGGTTCCGGTTTGGGTACCAGTACAAGACCCCAACCCCGAACATCGATCGGCTCTTCGCC GAGGGGACATCAGCAGACCGAGGTCTGATCCCGGTCTACCCGACAATCACGTTCCCGAACCACTACTCAATAGTAACCGGTTTGTACCCGGCTTACCACG GCATTGTACACAACGAGTTCGTGGACCCTGTCGACGGGGACCGGTTCACGATGGCGCGCCACGAAGCCAAGTTCTGGCTAGGGGAGCCGTTGTGGGAGAC GGTGGCCAATAACGGGTTTCCGGCTGCGGTTTACTATTGGCCTGGCGGGGAAGTGAAGAAAGGGAATTGGACTTGTCCTCTAAAGTTTTGTCCCAAATAC AATAACTCTGTTCCTCTTGAGGAACGAGTTGATACTTTGCTTGCTTACTTTGACTTGCCCGACAAGAAGATTCCGATTCTTATGAATCTCTATTTGGAAA GCCCCGAAGAAGGTCACCAGTTTGGGCCGGACGATTCCCAAACAACGGAGGCGGTGGCCAAAGTGGACGCCGTCCTAGGAAGGCTAATCAACGGTCTGGA GAAACGGCGACTGTTAGACGAAGTAACCATAATCTTCGTAGGAGACCACGGCATGGTTGGCACGTGCGAGAAGAAGTACATCTACATTGAGGACTTCTCC GACCGGATTACGATCCCGGATTCCTGGGTGATGAACGAATCGCCGGTGTTAATGATCCGCCCTACATTGGGAGTCAACGCCGCAGACGTAGTAGCGAAGA TGAAGGAAGCGTTAGGATCCGGAAAGGTGGAAAACGGAGCAAATTTAAAAGTGTACCTGAAGGAGGGTCTTCCGGCGAGGCTTCACTACTGGGAAAGCGA CAGGATTACTCCGATCGTCGGGATAGTCGGGGAAGGGTACACGGTGGCGCTGCGGCGGGGAAAGGAGAAGTGCGGGGGAGATCATGGGTATGATAATACT CTGTTTTCGATGAGGACTATGTTCGTCGGCAGAGGGCCGAGTTTCCGGAGAGGAGTAAAGGTTCCTTCTTTTGAGAATGTTGAGATTTATAAGTTGGTCA CTAATGTTTTGGGGATTCCCGGGGCTCCGAATAACGGGTCTTCGGGTTTCGTTGGCTCGGTCCTCATTGCCGATTAA
AA sequence Show only first row Show all	>Lus10007981 pacid=23162282 polypeptide=Lus10007981 locus=Lus10007981.g ID=Lus10007981.BGIv1.0 annot-version=v1.0 MANHSSQLVPPQPNQTTSLPPNQKTNSDYSNPLIFYSAFIFLTFISLFTTSNASSERISTSFRRPKPKLPRPVVIMVSADGFRFGYQYKTPTPNIDRLFA EGTSADRGLIPVYPTITFPNHYSIVTGLYPAYHGIVHNEFVDPVDGDRFTMARHEAKFWLGEPLWETVANNGFPAAVYYWPGGEVKKGNWTCPLKFCPKY NNSVPLEERVDTLLAYFDLPDKKIPILMNLYLESPEEGHQFGPDDSQTTEAVAKVDAVLGRLINGLEKRRLLDEVTIIFVGDHGMVGTCEKKYIYIEDFS DRITIPDSWVMNESPVLMIRPTLGVNAADVVAKMKEALGSGKVENGANLKVYLKEGLPARLHYWESDRITPIVGIVGEGYTVALRRGKEKCGGDHGYDNT LFSMRTMFVGRGPSFRRGVKVPSFENVEIYKLVTNVLGIPGAPNNGSSGFVGSVLIAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29680			Alkaline-phosphatase-like fami...		Lus10007981 [exp]	0	1
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10030684 [exp]	1.0	0.9736
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10032278 [exp]	3.7	0.9650
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10028798 [exp]	4.1	0.9460
AT1G18310			glycosyl hydrolase family 81 p...		Lus10038600 [exp]	5.7	0.8928
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	6.2	0.9644
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	6.2	0.9452
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Lus10039263 [exp]	7.9	0.8984
AT4G02320			Plant invertase/pectin methyle...		Lus10001467 [exp]	8.2	0.9611
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	9.2	0.9601
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	10.4	0.9563

Compare expression of checked genes

Lus10007981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.