Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69080 95 / 3e-23 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT5G17390 95 / 6e-23 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G03290 94 / 1e-22 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT2G03720 83 / 2e-19 MRH6 morphogenesis of root hair 6, Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G44760 54 / 2e-08 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT4G13450 42 / 0.0001 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034661 [exp] 116 / 1e-31 AT5G17390 160 / 3e-48 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10019173 [exp] 114 / 2e-30 AT1G69080 192 / 2e-61 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10036814 [exp] 64 / 3e-13 AT1G69080 109 / 7e-32 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10042701 [exp] 54 / 2e-08 AT1G44760 235 / 6e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10029664 [exp] 52 / 5e-08 AT1G44760 236 / 2e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10025644 [exp] 46 / 8e-06 AT1G44760 211 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10023716 [exp] 40 / 0.0002 AT4G13450 136 / 2e-41 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10032598 [exp] 41 / 0.0004 AT4G13450 177 / 7e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10014459 [exp] 41 / 0.0005 AT4G13450 195 / 8e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060700 [exp] 125 / 6e-35 AT3G03290 198 / 2e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.010G140200 [exp] 109 / 8e-29 AT1G69080 202 / 3e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.008G109000 [exp] 103 / 3e-26 AT1G69080 196 / 6e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.T170801 [exp] 101 / 9e-26 AT1G69080 196 / 3e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.005G177100 [exp] 64 / 5e-12 AT1G44760 226 / 3e-75 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G084600 [exp] 53 / 3e-08 AT1G44760 200 / 5e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.010G064800 [exp] 42 / 0.0002 AT4G13450 194 / 4e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10007982 pacid=23162340 polypeptide=Lus10007982 locus=Lus10007982.g ID=Lus10007982.BGIv1.0 annot-version=v1.0 ATGGCTCTTCCAAGACTACCCATGATGTGCGGCGGCGGCGGGTGCGGCAACTCAAAGGTAGCCCTGTCTCCGAAGAAGGTGGTCCGCCGTTCTCCGCCAC CACCAAAACCCCCGTCTTCCCCCGAGCAAAAGGTGGAGTTTCTGAGGAACGGGTCGACGGCGGAGGCCAAGGCCGCGGAGGCGGAGGCGGAGGCGGAGGC AGACAGTGGAAAAAACGGCCGAGGCAAGGACAAAGTGATGGTGGTGGTGGATTCGAGCGTGGAGGCGAAATCAGCACTTGAATGGGCGCTTTCCCGCGCA GTTAAGTCTGAGGACTCTATCCTCTTCCTTCTCTACGTCTGCAAGAGTTGCCGTCTTTCCGACGATGAGAAGCGTCAGTCTTCTGCTGATGACGGTGATG TTCTCAAGGGTAAACTCGTCAAGATTTATGAGCTTCTCTGCTCTCTCAAGAGCTTCTGCGAGAGGACAAAACCCGGTGTGGAAGTGGAAGTGATAATAAG GGAAGGGAAAAACAGGGGACCGGTGATCGTGGAAGAGGCAAAGAGGCAGAGGGTGTCGCTGTTGGTGTTGGGGCAGAGGAGAAGGCGGCTAGTTTGGCGG CTGATGCGGAGGTTGAAGATCAGAGCCTGGAGGCGGAAGAGCCACGGCGGCGGAGATGGAGATGTGGAGGAGGCGGCGGCGGCTGCGGTGAAGTATTGCA TACAGAACGCCACGTGCATGACTCTTGCGGTGAGGAGGAAGGGGAAGAAGCTCGGTGGGTACTTGATCACCGACAAGCATCGCAAGAACTTTTGGCTTCT TGCTTGA
AA sequence Show only first row Show all	>Lus10007982 pacid=23162340 polypeptide=Lus10007982 locus=Lus10007982.g ID=Lus10007982.BGIv1.0 annot-version=v1.0 MALPRLPMMCGGGGCGNSKVALSPKKVVRRSPPPPKPPSSPEQKVEFLRNGSTAEAKAAEAEAEAEADSGKNGRGKDKVMVVVDSSVEAKSALEWALSRA VKSEDSILFLLYVCKSCRLSDDEKRQSSADDGDVLKGKLVKIYELLCSLKSFCERTKPGVEVEVIIREGKNRGPVIVEEAKRQRVSLLVLGQRRRRLVWR LMRRLKIRAWRRKSHGGGDGDVEEAAAAAVKYCIQNATCMTLAVRRKGKKLGGYLITDKHRKNFWLLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17390			Adenine nucleotide alpha hydro...		Lus10007982 [exp]	0	1
AT4G18360			Aldolase-type TIM barrel famil...		Lus10042495 [exp]	1.0	0.9253
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10003644 [exp]	3.7	0.8654
AT2G30880			Pleckstrin homology (PH) domai...		Lus10027607 [exp]	4.0	0.7513
AT1G52780			Protein of unknown function (D...		Lus10033064 [exp]	6.2	0.7697
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10014655 [exp]	7.9	0.7428
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	7.9	0.8006
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10007603 [exp]	8.5	0.6778
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	9.2	0.8006
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	10.2	0.8006
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	11.2	0.8006

Compare expression of checked genes

Lus10007982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.