Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60910 290 / 2e-99 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT1G69120 285 / 3e-97 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT1G26310 261 / 9e-88 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT3G30260 204 / 2e-65 MADS AGL79 AGAMOUS-like 79 (.1) AT1G24260 174 / 1e-53 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G15800 174 / 2e-53 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT3G02310 172 / 8e-53 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT2G45650 168 / 2e-51 MADS AGL6 AGAMOUS-like 6 (.1) AT3G61120 163 / 2e-49 MADS AGL13 AGAMOUS-like 13 (.1) AT2G03710 160 / 7e-49 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021140 [exp] 441 / 1e-158 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10034662 [exp] 340 / 6e-119 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10017871 [exp] 318 / 3e-111 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10026679 [exp] 272 / 2e-92 AT1G69120 338 / 1e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10004637 [exp] 271 / 2e-92 AT1G69120 318 / 2e-111 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10005081 [exp] 242 / 9e-80 AT1G69120 223 / 1e-72 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10034370 [exp] 231 / 4e-76 AT1G69120 224 / 1e-73 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10034663 [exp] 189 / 3e-59 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10003124 [exp] 176 / 5e-54 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G062300 [exp] 322 / 6e-112 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.010G154100 [exp] 284 / 7e-97 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.008G098500 [exp] 282 / 3e-96 AT1G69120 336 / 9e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.004G115400 [exp] 269 / 6e-91 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.017G099800 [exp] 268 / 1e-90 AT5G60910 255 / 7e-86 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.008G098400 [exp] 192 / 5e-61 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.004G115500 [exp] 174 / 8e-54 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.014G074100 [exp] 174 / 1e-53 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.017G099700 [exp] 173 / 3e-53 AT3G02310 372 / 8e-132 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.003G169600 [exp] 172 / 3e-53 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10007983 pacid=23162332 polypeptide=Lus10007983 locus=Lus10007983.g ID=Lus10007983.BGIv1.0 annot-version=v1.0 ATGGGGAGAGGGAGAGTGCAGCTGAGGAGGATCGAGAACAAGATCAACAGGCAAGTGACGTTCTCCAAGAGGAGGTCAGGTCTTCTGAAGAAGGCTCATG AGATCTCTGTACTCTGTGATGCTGAAGTGGCTCTCATCGTCTTCTCCACCAAGGGCAAGCTCTTTGAATACTCCACTGATTCCTGTATGGAGAGGATCCT GGAACGTTATGAGAGATACTCCTATGCTGAGAGGCAGCTTCTTGCCAATGATACTGAGACATGCGGTAGCTGGACTCTAGAATATGCCAAGCTCAAGGCT AGGATTGAAGTCCTACAAAAGAACCTAAGGAACTACAACGGCCAAGACCTTGATTCCTTGAGCCTTAGGGAGCTTCAGAACCTGGAACAACAACTTGATT CTGCTCTTAAACATATCCGCTCCAGAAAGAACCAACTGATGTATGAATCCATCTCGGAGCTTCAGAAAAAGGACAAGGCATTGCAGGACCAAAACAACCA ACTGGCAAAAAAGGTTAAAGAAAGGGAGAAGGAAATATTGGAGCAACCTCAGTGGGAGCAACAACAGGATCCACCCTCTCTGGTTACTCAACAAATGGAG GACTCACCCTCCAGCATCGTCGTTGCACCACAGCCATTCCAGCCTCTAGACATAAGTGGTGGCAGCGGTGGAGGTGGCGGAGGAGGTTATCAGCTGGCAA GGGGAAACACAGGAGTTGAAGAAGGAACGAGTAGTTCGTCGTCCCAGCATCGACCCAGTGCAGTGCTGCCTTCATGGATGATGGGAAACCATATATAG
AA sequence Show only first row Show all	>Lus10007983 pacid=23162332 polypeptide=Lus10007983 locus=Lus10007983.g ID=Lus10007983.BGIv1.0 annot-version=v1.0 MGRGRVQLRRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYSYAERQLLANDTETCGSWTLEYAKLKA RIEVLQKNLRNYNGQDLDSLSLRELQNLEQQLDSALKHIRSRKNQLMYESISELQKKDKALQDQNNQLAKKVKEREKEILEQPQWEQQQDPPSLVTQQME DSPSSIVVAPQPFQPLDISGGSGGGGGGGYQLARGNTGVEEGTSSSSSQHRPSAVLPSWMMGNHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10007983 [exp]	0	1
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10021140 [exp]	1.0	0.9430
AT2G41705			camphor resistance CrcB family...		Lus10028071 [exp]	2.8	0.7895
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10018610 [exp]	4.5	0.7845
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10034662 [exp]	4.9	0.8370
AT1G52190			Major facilitator superfamily ...		Lus10038618 [exp]	8.3	0.8137
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005878 [exp]	13.4	0.7775
AT2G36200			P-loop containing nucleoside t...		Lus10022694 [exp]	13.7	0.7499
AT1G50920			Nucleolar GTP-binding protein ...		Lus10039110 [exp]	16.7	0.7392
AT1G53160	SBP	SPL4	squamosa promoter binding prot...		Lus10039846 [exp]	24.5	0.7720
AT1G50920			Nucleolar GTP-binding protein ...		Lus10038748 [exp]	27.9	0.7273

Compare expression of checked genes

Lus10007983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.