Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69170 161 / 2e-44 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT5G50570 135 / 2e-35 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) AT5G50670 135 / 2e-35 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G02065 132 / 2e-34 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT3G60030 129 / 1e-31 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT5G43270 125 / 3e-31 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT2G33810 117 / 3e-31 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT2G42200 124 / 4e-31 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT3G57920 124 / 4e-31 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT1G76580 127 / 6e-31 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021141 [exp] 821 / 0 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10000643 [exp] 158 / 1e-41 AT1G69170 192 / 4e-55 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10036812 [exp] 148 / 3e-39 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10011348 [exp] 132 / 1e-34 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10003126 [exp] 132 / 2e-34 AT5G50670 161 / 5e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10016275 [exp] 131 / 3e-34 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10021034 [exp] 131 / 1e-33 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10023818 [exp] 130 / 2e-33 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10012020 [exp] 131 / 5e-33 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060400 [exp] 321 / 2e-103 AT1G69170 153 / 4e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.008G097900 [exp] 171 / 3e-47 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.010G154300 [exp] 155 / 1e-41 AT1G69170 152 / 3e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.015G098900 [exp] 144 / 2e-38 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.012G100700 [exp] 138 / 1e-36 AT5G50570 222 / 6e-70 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.001G058600 [exp] 134 / 1e-34 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.014G057700 [exp] 129 / 2e-33 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.002G142200 [exp] 129 / 3e-33 AT1G02065 243 / 8e-79 squamosa promoter binding protein-like 8 (.1.2) Potri.004G046700 [exp] 123 / 3e-33 AT1G53160 135 / 4e-41 squamosa promoter binding protein-like 4 (.1.2) Potri.002G142400 [exp] 128 / 2e-32 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10007984 pacid=23162307 polypeptide=Lus10007984 locus=Lus10007984.g ID=Lus10007984.BGIv1.0 annot-version=v1.0 ATGGAGTATTCTAGCTATGGGAGTAAAGGAAGTACTGCTGCTTTTGTCTCTAATGAAACAACAATGTCATCTTCTTCTTCTGATACTTCCACAAGAAGCA GAACTGGTTCCTTGTTGGATTGGGATTTGAGAAGGGCTTTGGTTTCATCAGCTCCATTTGTTGAGAATCAGAGTTTTGGGGAAATGTGGGGTTACTGCCA CCATGAAGTGGTGGCAAAGGCTTTACCTTTACCTCATGGTTCAGTTAGGTATCACTTGAACAGCAAGGGTGAGACTGAGGAGTGCATAAAGAATCCTTTT GTGGTTAATTCAAGTGCATTGTGTTTAAAAGATGAGTCAAGTTCCAGGCTTTCTATTTCTAGCTCTGTCGTGGAGTACTCCACCAACAGTAGTAAGGATC ACTCTTCTGCTTCTTTCATTGATTTGAAGCTTGGGAGGGTTGGGGATCCATCTAAGTTGTACACTCCTCCGAAAAGAGCACGGTTCGGAGGAGCCAACTC GAATGCAGCAGCACACTGCCAAGTTTATGGATGTAACAAGGATTTGAGCTCCTCGAAAGAGTATCATAAGAGACATAAAGTGTGTGATGTTCACTCAAAG ACGGCTAAGGTCATTGTTAATGGAATTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTTCATTTGCTGGCTGAATTTGACGATGGTAAGCGCAGCTGCC GGAAGCGTCTTGCAGGTCACAATGAGCGTAGGCGAAAGCATCAAGTCAGGATTCATTCTGGAAGAGCTGCCAGACTCATTCAAGCGTACAATGGCTTCCC GAGTGGCAGAATTCAGGAGACTGGATTGACATCATCTTTTATCTGCCAAGACATACTCCCCGGAACACTACTTTATTCTGAGAGATACGGTGCAAATGAG TACTCGTCCAGACGTGTTAAGCATGAAGATCAGGAGAGTACTTTGAGTCCTAATCTATCTGGCATTTCCGTCTTGGAACAACCACTCTATCCCTTTGAGA AAATGTTCCCTGCCTTCCGCGACGGTGTAGTTACTACACCATCCGGAAGCATCTTCAGCGAGAACAACAACCGATATCCACTTGATGCTGGAGGGTCGAA TTCATCATCACATTGTCTTGTGCCTCAAGGAACCTCTTCTTTAGGAAACGATGAGTTCATTACACTGGATGCAGCAGCATCACCAACCATTCAGGGATTA TCTGGTGTCACAATTGCAGACTCCTCCTCCACTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAGAGTTCATCATCAAGCCAGTCATCACAAATCC CCATGGCCGGCCATCATTATGGTATGAACCAGCAGCAGCAGGTTTCAGGAAGGATGATAAGATTTGGTCTCGCCACAGAAGCGAGTCACTTGATGAGCCC TTTACTCCTTTCTCACTTGGAGGATCATAACACAAATGGAGAAGACACCACCACCATCGACTTGCTTCAACTGTCATCGCAGCTTCACCGTGTGGAAAAC GAAAAGCAGAAGTCTTTGCAACAAGATGCTGCTGAGGTCTACTTGCTCTAA
AA sequence Show only first row Show all	>Lus10007984 pacid=23162307 polypeptide=Lus10007984 locus=Lus10007984.g ID=Lus10007984.BGIv1.0 annot-version=v1.0 MEYSSYGSKGSTAAFVSNETTMSSSSSDTSTRSRTGSLLDWDLRRALVSSAPFVENQSFGEMWGYCHHEVVAKALPLPHGSVRYHLNSKGETEECIKNPF VVNSSALCLKDESSSRLSISSSVVEYSTNSSKDHSSASFIDLKLGRVGDPSKLYTPPKRARFGGANSNAAAHCQVYGCNKDLSSSKEYHKRHKVCDVHSK TAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKHQVRIHSGRAARLIQAYNGFPSGRIQETGLTSSFICQDILPGTLLYSERYGANE YSSRRVKHEDQESTLSPNLSGISVLEQPLYPFEKMFPAFRDGVVTTPSGSIFSENNNRYPLDAGGSNSSSHCLVPQGTSSLGNDEFITLDAAASPTIQGL SGVTIADSSSTGCALSLLSSQSQSSSSSQSSQIPMAGHHYGMNQQQQVSGRMIRFGLATEASHLMSPLLLSHLEDHNTNGEDTTTIDLLQLSSQLHRVEN EKQKSLQQDAAEVYLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10007984 [exp]	0	1
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10005530 [exp]	3.2	0.9096
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	3.7	0.9151
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	3.9	0.9071
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10024469 [exp]	13.8	0.8947
AT5G21150		AGO9	ARGONAUTE 9, Argonaute family ...		Lus10026750 [exp]	15.7	0.8902
AT4G13360			ATP-dependent caseinolytic (Cl...		Lus10043253 [exp]	16.9	0.8555
AT5G25590			Protein of unknown function (D...		Lus10037902 [exp]	18.1	0.8989
AT4G16490			ARM repeat superfamily protein...		Lus10014691 [exp]	21.4	0.8850
AT2G48020			Major facilitator superfamily ...		Lus10008179 [exp]	23.0	0.8639
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	23.5	0.8861

Compare expression of checked genes

Lus10007984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.