Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60920 731 / 0 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 696 / 0 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 672 / 0 COBL2 COBRA-like protein 2 precursor (.1) AT5G15630 624 / 0 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT1G09790 447 / 4e-155 COBL6 COBRA-like protein 6 precursor (.1) AT5G60950 243 / 1e-78 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 154 / 2e-40 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 152 / 4e-40 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT4G27110 127 / 2e-31 COBL11 COBRA-like protein 11 precursor (.1) AT3G16860 126 / 4e-31 COBL8 COBRA-like protein 8 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021144 [exp] 875 / 0 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034671 [exp] 804 / 0 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 691 / 0 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034379 [exp] 669 / 0 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10017863 [exp] 616 / 0 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 612 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 612 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 612 / 0 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 598 / 0 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060000 [exp] 772 / 0 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 699 / 0 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060100 [exp] 627 / 0 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 608 / 0 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 608 / 0 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 590 / 0 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 582 / 0 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 550 / 0 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 468 / 1e-163 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G167100 [exp] 412 / 2e-141 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10007986 pacid=23162328 polypeptide=Lus10007986 locus=Lus10007986.g ID=Lus10007986.BGIv1.0 annot-version=v1.0 ATGGAAGCCTCTTACTTCTCTTCTTTTGGTGGCCTGTTCACCAAGCTCTGTGCTTCCACCATACTGCTGCTGTTCTTGCTCTCTTCCTCTACTTTCACTT CCACAGAAGCTTATGATGCTTTGGATCCTAATGGGAATCTCACCATCAAATGGGACATCATTAACTGGACCCCAGATGGCTATGTTGCAGTTGTGACTAT GTACAACTTCCAGCAGTACCGCCACATTCAAGCACCAGGGTGGACTCTGGGGTGGTCATGGTCTAAAAAGGAAGTGATTTGGAACATGATGGGAGCTCAA ACCACTGAACAAGGAGACTGTTCCAAGTACAAAGGAAACGTCCCCCATTGTTGTAAGAAGACTCCCACCGTTGTGGATTTATTGCCTGGCACTCCTTACA ACCAGCAGATTGCAAACTGCTGCAAAGGCGGAGTGATCAACGCTTGGGCTCAGGATTCAGCTGGCGCGGTCTCCTCGTTCCAAGTCAGCGTCGGAGCTGC TGGAACCACTAACAAGACTGTTAGGGTGCCCAAGAACTTCACCTTGCTTGGACCTGGTCCTGGTTACACTTGTGGCCCTGCCAAGGTTGTTAGGCCTACC AAGTTTTTGACTGCAGATAAAAGGAGGGTCACTCAAGCTTTGATGACATGGAATGTTACTTGCACATACTCACAATTCCTGGCTCAAAAGACACCGACTT GTTGCGTATCGCTCTCGTCCTTCTATAACGATACACTCGTGGGATGTCCGACTTGTGCTTGCGGATGTCAAAACAAGACTGCTGGGAGCTGTGTGAATCC AGAAACTCCACATTTAGCCTCGGTGATCTCGGATCCGAACAAACAAGACACGACACCTTTGGTGCAGTGTACGGGCCATATGTGTCCAATTCGAATCCAT TGGCATGTGAAGCTGAATTATAAGCAGTACTGGAGGGTGAAAGTAACCATCACCAATTTCAACTACAGAATGAATTACACACAGTGGAATCTAGTAGTGC AACACCCCAATTTCGACAATCTTACGCAGCTTTTCAGCTTCAATTACAAGTCATTAACTCCTTATGATGGCTTCAATGATACAGCCATGCTATGGGGAGT CAAGTTCTTCAACGATTTCCTCTCACAAGCTGGCCCCTTGGGGAACGTCCAGTCAGAGCTTCTATTCCAGAAAGATCTTTCGACTTTCACTTTTGAGAAG GGATGGGCTTTCCCCAGGAGGATTTACTTCAATGGTGATAACTGTGTTATGCCCTCTCCAGATGCATATCCATGGCTGCCTAATGACGGTTCTCAATCAA GCGTGCCTCTACTTCGAGCCCTTGCAACTGCATTGTTGTCGATCATCGTCCTATTGGCTTATGCATGA
AA sequence Show only first row Show all	>Lus10007986 pacid=23162328 polypeptide=Lus10007986 locus=Lus10007986.g ID=Lus10007986.BGIv1.0 annot-version=v1.0 MEASYFSSFGGLFTKLCASTILLLFLLSSSTFTSTEAYDALDPNGNLTIKWDIINWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWSWSKKEVIWNMMGAQ TTEQGDCSKYKGNVPHCCKKTPTVVDLLPGTPYNQQIANCCKGGVINAWAQDSAGAVSSFQVSVGAAGTTNKTVRVPKNFTLLGPGPGYTCGPAKVVRPT KFLTADKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTLVGCPTCACGCQNKTAGSCVNPETPHLASVISDPNKQDTTPLVQCTGHMCPIRIH WHVKLNYKQYWRVKVTITNFNYRMNYTQWNLVVQHPNFDNLTQLFSFNYKSLTPYDGFNDTAMLWGVKFFNDFLSQAGPLGNVQSELLFQKDLSTFTFEK GWAFPRRIYFNGDNCVMPSPDAYPWLPNDGSQSSVPLLRALATALLSIIVLLAYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10007986 [exp]	0	1
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10021144 [exp]	1.0	0.8582
					Lus10032489 [exp]	2.4	0.6924
AT1G05070			Protein of unknown function (D...		Lus10030034 [exp]	5.5	0.7055
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10008522 [exp]	14.8	0.6393
AT5G42660			Protein of unknown function (D...		Lus10032863 [exp]	28.6	0.6237
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10018427 [exp]	28.8	0.6315
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	40.2	0.5794
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10005614 [exp]	42.6	0.5802
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013884 [exp]	43.6	0.5843
AT1G51540			Galactose oxidase/kelch repeat...		Lus10033376 [exp]	56.4	0.6013

Compare expression of checked genes

Lus10007986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.