Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74120 474 / 2e-165 Mitochondrial transcription termination factor family protein (.1) AT1G21150 72 / 2e-13 Mitochondrial transcription termination factor family protein (.1) AT5G54180 65 / 4e-11 PTAC15 plastid transcriptionally active 15 (.1) AT1G61960 61 / 1e-09 Mitochondrial transcription termination factor family protein (.1) AT1G62010 60 / 1e-09 Mitochondrial transcription termination factor family protein (.1) AT4G02990 60 / 2e-09 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT5G55580 59 / 4e-09 Mitochondrial transcription termination factor family protein (.1) AT1G62085 59 / 4e-09 Mitochondrial transcription termination factor family protein (.1) AT5G23930 58 / 6e-09 Mitochondrial transcription termination factor family protein (.1) AT1G61980 56 / 3e-08 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021146 [exp] 837 / 0 AT1G74120 468 / 3e-163 Mitochondrial transcription termination factor family protein (.1) Lus10042322 [exp] 61 / 1e-09 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Lus10003775 [exp] 61 / 1e-09 AT5G55580 546 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10035714 [exp] 61 / 1e-09 AT1G78930 582 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10012021 [exp] 55 / 1e-07 AT5G06810 437 / 5e-141 Mitochondrial transcription termination factor family protein (.1) Lus10035227 [exp] 55 / 1e-07 AT4G14605 518 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10032061 [exp] 54 / 1e-07 AT4G14605 521 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10029422 [exp] 54 / 2e-07 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10016971 [exp] 53 / 2e-07 AT2G36000 271 / 2e-89 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G051600 [exp] 552 / 0 AT1G74120 501 / 2e-176 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 68 / 4e-12 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.004G013000 [exp] 65 / 4e-11 AT5G07900 193 / 1e-57 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 64 / 5e-11 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.015G005200 [exp] 64 / 9e-11 AT5G54180 493 / 3e-171 plastid transcriptionally active 15 (.1) Potri.011G005100 [exp] 64 / 1e-10 AT5G07900 199 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.001G034900 [exp] 63 / 1e-10 AT5G07900 184 / 2e-54 Mitochondrial transcription termination factor family protein (.1) Potri.003G189300 [exp] 61 / 5e-10 AT5G07900 178 / 6e-52 Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 61 / 9e-10 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.003G190700 [exp] 59 / 2e-09 AT5G07900 213 / 3e-65 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10007988 pacid=23162290 polypeptide=Lus10007988 locus=Lus10007988.g ID=Lus10007988.BGIv1.0 annot-version=v1.0 ATGCCCGCGTCTTCTGCTGATCAGTCCCGCATGGGTGGCGCGTGCGCATTCCCGCTATCAATGGCGGCGTTCCGAATCCTCCGAACACCTCCGGTTCTCC GTTGCGCCACCGTCACTTCACAGTTGCCCCCGCTTCTTACTACAACAGGTCTCCGTTTGCTTGCCATAAAGCCCAGCTCCCGGAATCAGCCTGACTACAG GAAACAGATTTCTCTCGCCAATATCCTCCAGAGGTACGGTTTCCCTACATCCCAGCTCCAGAATTTCCTTAGCCGGAATCGATTTCTCTTGGATTGGAAC TCGGTAGACGTCGAGAAGTCTCTGTGCATCCTCTCATCTTTCAGAATCCCTCAGACTTCTCTCGTCTCTCTATTGAGTGACTGTCCAGGAGTTCTGGACT TGCAGTTCTTGAAGAAATGGCAATTAGGGTTTTCCGATTGTGAGGATTTATGTGTATACCCGTCAGTGATTCGGAGTGTTCTGGAGCTCTCTAGGAAGTT TGATCTTGATGCTGTTATGTTTGTGAGCAGGATAGCAGTTTTGAAAGGTTTAGGGTTTAGTGAAGGTACGGTTAGGAAGGTTTTAGAGGGGTTTCCTCGG GTGATTCTGATGAAGGAAGGTGAAATACACAGAAGGGTTGAGTTTCTGAAGGGGATTGGGATTGGCAGTGATGGAGTTGATTGGATTCTATACTCAGTTC CACAGGTACTAGGGTTCGGGATCGAAAACAGACTAATGCCATTGCTTACCGAGTTTGAACAGCTTGGTTTCAGCAAAGAGCTAGTGAGGAAGGAGATCAT TACAGAGCCTCGAATTTTCGGATTGGAAGTAGGCGAATTGACAAGGTGTATAGAGTTGCTAGGGTCTTTGAAATGCCGAGAACCGATAAAGTTGAAGATC TTCCGCAATGGAGAACTCAGAGCTGGATTCGACGTGAAACTCAGAATCGATTGCTTATGCAAACATGGGCTGACTCATCGGGAAGCTTTCGCAGTCCTAT GGAAGGAGCCGAGGGTGATTGCTTACGATTTAGAAGAGACTGATAAGAGGATTCAGTATTTGGTTAGCACAATGAGATTCAGCTCTCGTTGCTTGGTCGA GGTCCCGGAGTATCTAGGTGTGAGTTTCGAGAAGCAGATTGTTCCTCGGTACAATGTGATCCAGTATCTGCGTGCGAAAGGTGGACTTGGTGACGAGGTT GGACTAAAAGGTATCATAAAGCCGAGCAGGCTTAGGTTCTACAACTTCTACGTGAAGCCATATCCGGAATGCGAAAGGCTGTATGGAAGGTTCTCTGAGG AAGTTAGAAGTAAAAGGAAACATCCAGCTGGAATGTGGAAGCTTTTCAAATCGCCTAGTTACTCGGAGTCGAAAGAGGACGTGAAGAATATGAGGTCATT CATGGATCCTTCTCCTTAG
AA sequence Show only first row Show all	>Lus10007988 pacid=23162290 polypeptide=Lus10007988 locus=Lus10007988.g ID=Lus10007988.BGIv1.0 annot-version=v1.0 MPASSADQSRMGGACAFPLSMAAFRILRTPPVLRCATVTSQLPPLLTTTGLRLLAIKPSSRNQPDYRKQISLANILQRYGFPTSQLQNFLSRNRFLLDWN SVDVEKSLCILSSFRIPQTSLVSLLSDCPGVLDLQFLKKWQLGFSDCEDLCVYPSVIRSVLELSRKFDLDAVMFVSRIAVLKGLGFSEGTVRKVLEGFPR VILMKEGEIHRRVEFLKGIGIGSDGVDWILYSVPQVLGFGIENRLMPLLTEFEQLGFSKELVRKEIITEPRIFGLEVGELTRCIELLGSLKCREPIKLKI FRNGELRAGFDVKLRIDCLCKHGLTHREAFAVLWKEPRVIAYDLEETDKRIQYLVSTMRFSSRCLVEVPEYLGVSFEKQIVPRYNVIQYLRAKGGLGDEV GLKGIIKPSRLRFYNFYVKPYPECERLYGRFSEEVRSKRKHPAGMWKLFKSPSYSESKEDVKNMRSFMDPSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74120			Mitochondrial transcription te...		Lus10007988 [exp]	0	1
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10035587 [exp]	12.0	0.8239
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10003872 [exp]	13.0	0.8101
AT1G10522			unknown protein		Lus10030834 [exp]	14.1	0.6991
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Lus10005945 [exp]	18.8	0.8144
AT1G52310			protein kinase family protein ...		Lus10040381 [exp]	22.5	0.7999
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10040068 [exp]	26.0	0.7843
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10024925 [exp]	29.1	0.7864
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10022290 [exp]	29.6	0.8003
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10030124 [exp]	33.0	0.7400
AT3G61360			Tetratricopeptide repeat (TPR)...		Lus10001784 [exp]	34.6	0.7582

Compare expression of checked genes

Lus10007988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.