Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26190 246 / 9e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G29760 150 / 3e-38 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36540 143 / 5e-38 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36550 103 / 1e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021147 [exp] 1590 / 0 AT4G26190 241 / 2e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10034676 [exp] 335 / 3e-100 AT4G26190 225 / 3e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10017858 [exp] 328 / 1e-97 AT4G26190 224 / 8e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032890 [exp] 233 / 2e-68 AT4G26190 214 / 7e-63 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019759 [exp] 166 / 2e-45 AT2G36540 174 / 1e-53 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10027135 [exp] 145 / 9e-39 AT3G29760 134 / 5e-36 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10008033 [exp] 117 / 6e-30 ND / Lus10038713 [exp] 114 / 1e-29 ND / Lus10033128 [exp] 116 / 3e-26 AT1G74860 147 / 1e-38 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059000 [exp] 287 / 4e-86 AT4G26190 253 / 9e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G116400 [exp] 275 / 2e-78 AT4G26190 235 / 4e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244200 [exp] 212 / 7e-62 AT2G36540 190 / 4e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244400 [exp] 181 / 8e-51 AT2G36540 169 / 1e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10007989 pacid=23162283 polypeptide=Lus10007989 locus=Lus10007989.g ID=Lus10007989.BGIv1.0 annot-version=v1.0 ATGGTGAAGACAAAAGGCGGAGGTAAGCAGCATAGCACTGACCCTATCGAAGAAGAGACTGATGGAATTCAGAAAATGCGAGGGAAGGGCAAGTCAATGG AAACTATTAATCGACTTGCCGAGCGTGCAATTACTGTTTCGAATAGGAGAGAAGCAGATAAGAAGAAGAAAAAACAAAAGATCTACGAAACCCTTGAGTC TTTCCCCCTAATTAGAATTCTGACGACTAGACCTGGAGCATCCACCGCCGTCGCCGTCGAGTACACCCTCTTTACTACGCCTCCACTTTCAATCATCACT CGCTCAATCGCCATTATCGACTTCAGCTATTGCTCTTTCAGAGCTATGTCCGTCGTAAAGGATGCACCCATGACTGATATCTCTGAGACTCAATCCACTG TAGAACCGGAATGCTTACAGATGGCGAAAAGGAGGAAAAAGAAACGAGTGAAGAGGTCTCATGACTCTAGTGCTGATACCCTTGCTTATGTTTACGCCAC AAAGGATAATTCTGGTGAAAAGAACACTTTCGTTGAGGAGGCTGGAGTCTATGCTAATTCAAATGATGATTCTGATAGGATGCAAGAGGCAGAGTCAATT ACCTTACAGGAAATGATGATGAAAGTGAAGAAGAACAAGAAACGTTTGACAAATCTCCAGCCTACAACAGTGCTTCCATCACAAGAGGAAGCGGAGCTAC TAAAGGAAGGAGGGAAGAAAAGGAAGAAGCGAAAGAAAGACCTGTGTAGTCACCAAACTTTTGCATCAAAAGATGAAGAACAACTTGGCATGATAACACA GGTTTCCAGTGATTTTCACGCTGACATTTCTGTACCAGGTAACACTGTCTGTGAAACAGTTGATGTCAATGAGGATGAAGTTGATGCTGAATCAAAGAAA GACTTGAGTACTATTAATCCTACAGAGTTAGCTACCTTCCAGATGGGAGGAAAGAAAAATAAAAGGAAGAAGAAGAAGCGTAAGCCGGAAAAGATTCTCA ATAATTCCCAGCCTGCAGAGTTGCTTTCGTCGCTAGGGGATGGATGCCTTGAGAAGGCACAAAACATTGGCTTTGATGAGGCGCACGTTTCAGCAACAGA GAATACAACTAGTGAAGAAAACGGTTGTGTTGATGAGGCCAACATTGATGTTCATTCAAAGAAAGGTTCAAATATTATACAGGCGGAAGAATTGGTTACC TCGCAGGAGGAAAGAAAGAAAAAGAAGCGGAAGAAAGCTAAGATAAATCATCAACCTACAGACTTGCCTGCATCACAGAAGGAAGGTTGTCTTGAGAAGA TACAGAAGGTTAGCCTGCCTGAAATATCTGGAACGGGAAAAAATACTATCAGTGAAACAGGCGATCATGTCAATAAGACTGAAGAGTCTGCTATATCAAA TACAAAGTCATGCACTATCCAGACTACAGAGTCAGCTTCCATACAGAAGGGGGGAAAGACTAAGAAAAGGAAAACGGAAGATTTGAATAGTCCCCAGTCT GCAGAATTCATTGCATCACAAGAGAAAGGAATTATTCAGAGCACACAATATGTTGGTAGTGACCCTGATCTTGACATCTCCGGAACGGATACTATCAGTA GAGAAGATTCAGATGAGATTGAAATGGATACTATATCTAAAGATGTTTTGAATAATCCCCTGTCCACAGAATCCCTTGCATCACAAGAGAAACAATTACT TCAGAGGACACATACTGTTGGTAGTGACCCACAGATTGACATCACTGCGACTGGAAGTTTTATTGGAAGAGATTCTGAGGCGTCTGAAATTGATGCTAAC CTTACAAAGGATATGAATAATTCCCAGACATCAGCTCTGGCGGCAGTGGAGGAAGAAAAGAAAAGGAAGAATCAGCAAGATTCAAGTTGTGTGCAGCCCA TGCAAATGCCTACTGCAGTGGAAGAAGGAAATATGAATAAGAAGCAGAAGAAAGACTCAATTAGTTCCCATCCTGAACAGTTGGATACATCACACGAGGA AGTGGTGCTTGAGAGGATACCTGCCAGAGTTTCTCAGTCCGACCTTTCTGCTGAAGATAATAGTGTTTTTGTAAAGCACTCTTGTATTGATGAGACGGAA GGTGTTACTAATGAAAAGATAGAAGCAACTAGTTCCCAGGCTGCTAAATCAATTGAACTGCAGAAGGAAGGAAAGAAGAAGAGGAAAGAATTGAATGATG CCCAGCTTGTGGAATTGTTTGAGTTGGAAGATGGGGATGAGGATAAGAAGCAAAAGAAACATTTGCAGCACTTGAACCCCACAGAATCATCTATGTCACA AGAAGAAAAAAGGGGGAAAATGCTTAAACATGAGCAGAGCATTGCTTGTCAAGGCAGAGAAGATGCACACGGAAACAAAGCTGAAACAGGATTTGTAAAC AGAAATGAGATTATGTTGATCCAAGGTGAAAAAGGTTTTTCTCCAGTATGCTTAACAACAGGTTCAGCTGAAACAGTTGATGGTAATGAAACTGGACTTG TATCTATTAAGGAGACTATAGAAGTCTCAACAAGTCCAGAACTCATCAGTGGACACACTTCCGGGAACAACTTAAGTGATGAGCTCATGGTGGATAAATT GAACGGAGAACTAAATAGAGAGCAAAACACTTCAATGAAAGCTAAAGAATTTGTCTCGACGGACAGTGCTCCTTCAAACTTTTCAAAAGAGGATGTAACA TCTGAGGATATCAAGAATATTACTGAATGGGCAGATGAAGAATTGAAGAGGACTTCTCCTGGAGGGATTAAAGCTAGTAGTCGAAGTTCAGAGAACAACT CAAATGGGGAACAATTAGATAAGCACTGTACATCAGTGAAGGAATTGGAGATCACGACAATGAAGATTGCCAATCTTAGCTGTCCTAACCTCGATGTCTT ACACGATGAAAGCAAGAAAACAACCATAAGTATGAATGTTGCTACGGAAAACAATAGCATTTCACGAGTAATGATTCCATTGAAAACAGTTCCTGATGTA CGTGCTAAAAAGCTCCTTATCCTTGACGTCAATGGACTTTTAGTTGATATCATTCCAAATTCAGAGTGTCCTACCTCACGTCAGCCTGACCTTAACGTCA GTAAAAAATCAGTTTTCAAAAGGCCCTACTGTAGTGATTTCCTCCGCTTCTGCTTCGAGAATTTTGCAGTTGGTGTATGGTCGTCAAGAACCTGGAAAAA TTTGGACAGAGTAGTCAAGTTTCTCTTTCGAGATTCAGAAAGAAATTTACTTTTCTGTTGGGACCGATCTAACTGCACTCAGACAGGCTTGTCCACAATC GATGATCCGAACAAACCTCTGGTTTTAAAAGAATTGAGAAGACTATGGAGGGATCGGAAGACACTTCCGTGGAGAAGGGGTGTCTTTGATGCATCCAATA CGTTATTGTTGGATGATTCTCCATACAAGGCGTTACGCAATCCGGTGCACACAGCCATATTTCCCTATTCATACAAATTCACTGATGCCGAAGATTCTGC ATTAGGACCAGAGGGTAATCTCCGAAAGTACCTGGAGCGGTTACTCGAGGCACGGAACGTCCAAGAATTCGTGTCGGAAAACCCATTTGGCCAAGGACCA ATTACAGCGTCCCACCCTTCTTGGCGGTTCTACTGCAAGATCATAATAGGTGAATAA
AA sequence Show only first row Show all	>Lus10007989 pacid=23162283 polypeptide=Lus10007989 locus=Lus10007989.g ID=Lus10007989.BGIv1.0 annot-version=v1.0 MVKTKGGGKQHSTDPIEEETDGIQKMRGKGKSMETINRLAERAITVSNRREADKKKKKQKIYETLESFPLIRILTTRPGASTAVAVEYTLFTTPPLSIIT RSIAIIDFSYCSFRAMSVVKDAPMTDISETQSTVEPECLQMAKRRKKKRVKRSHDSSADTLAYVYATKDNSGEKNTFVEEAGVYANSNDDSDRMQEAESI TLQEMMMKVKKNKKRLTNLQPTTVLPSQEEAELLKEGGKKRKKRKKDLCSHQTFASKDEEQLGMITQVSSDFHADISVPGNTVCETVDVNEDEVDAESKK DLSTINPTELATFQMGGKKNKRKKKKRKPEKILNNSQPAELLSSLGDGCLEKAQNIGFDEAHVSATENTTSEENGCVDEANIDVHSKKGSNIIQAEELVT SQEERKKKKRKKAKINHQPTDLPASQKEGCLEKIQKVSLPEISGTGKNTISETGDHVNKTEESAISNTKSCTIQTTESASIQKGGKTKKRKTEDLNSPQS AEFIASQEKGIIQSTQYVGSDPDLDISGTDTISREDSDEIEMDTISKDVLNNPLSTESLASQEKQLLQRTHTVGSDPQIDITATGSFIGRDSEASEIDAN LTKDMNNSQTSALAAVEEEKKRKNQQDSSCVQPMQMPTAVEEGNMNKKQKKDSISSHPEQLDTSHEEVVLERIPARVSQSDLSAEDNSVFVKHSCIDETE GVTNEKIEATSSQAAKSIELQKEGKKKRKELNDAQLVELFELEDGDEDKKQKKHLQHLNPTESSMSQEEKRGKMLKHEQSIACQGREDAHGNKAETGFVN RNEIMLIQGEKGFSPVCLTTGSAETVDGNETGLVSIKETIEVSTSPELISGHTSGNNLSDELMVDKLNGELNREQNTSMKAKEFVSTDSAPSNFSKEDVT SEDIKNITEWADEELKRTSPGGIKASSRSSENNSNGEQLDKHCTSVKELEITTMKIANLSCPNLDVLHDESKKTTISMNVATENNSISRVMIPLKTVPDV RAKKLLILDVNGLLVDIIPNSECPTSRQPDLNVSKKSVFKRPYCSDFLRFCFENFAVGVWSSRTWKNLDRVVKFLFRDSERNLLFCWDRSNCTQTGLSTI DDPNKPLVLKELRRLWRDRKTLPWRRGVFDASNTLLLDDSPYKALRNPVHTAIFPYSYKFTDAEDSALGPEGNLRKYLERLLEARNVQEFVSENPFGQGP ITASHPSWRFYCKIIIGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10007989 [exp]	0	1
AT3G53320			unknown protein		Lus10023170 [exp]	3.9	0.8821
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10037059 [exp]	5.3	0.9010
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10033440 [exp]	8.1	0.8665
AT4G39860			unknown protein		Lus10041695 [exp]	9.2	0.8479
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	10.3	0.8923
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10007420 [exp]	11.7	0.8082
AT4G10070			KH domain-containing protein (...		Lus10002947 [exp]	14.1	0.8711
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031336 [exp]	15.3	0.8488
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Lus10019486 [exp]	17.2	0.8621
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	18.3	0.8636

Compare expression of checked genes

Lus10007989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.