Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026425 [exp] 89 / 1e-22 ND 37 / 0.008
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007991 pacid=23164433 polypeptide=Lus10007991 locus=Lus10007991.g ID=Lus10007991.BGIv1.0 annot-version=v1.0 ATGTCTGGCATGAAAATTTGCCACTCCATCCGCGGTGCTGTAATGCAGACGCAGTCTCAACCGATAATCGATTTGGATGCCGAGAAAGGGACAATAGCAT TTCAAGATTTTGATGTCGACAATATGTGCAAACTTAGACTTTGTTCAGCCTTGCTACAATGTTTACATGTGCTTGCTAATGCAGGCAGGGGTGTGTATCC ATTATGGAATGTTGTCATGGGGCAGTCATACCTCCGTGACAATCACGTGATGATACCAGTTGAGTTTTCAAGGGATTTTTGGGAGTGGAAGCATCAGGCC GTCAAGCTTATTCAAGTAGCCGACAACATCCACCCGAAGAACAACTCAAAGAAGGAATGGTTTATGAAAGTAAAAAAACAGAAAACCAAGGCTCAGATGT ACATGGGGAAACATGACTAG
AA sequence Show only first row Show all	>Lus10007991 pacid=23164433 polypeptide=Lus10007991 locus=Lus10007991.g ID=Lus10007991.BGIv1.0 annot-version=v1.0 MSGMKICHSIRGAVMQTQSQPIIDLDAEKGTIAFQDFDVDNMCKLRLCSALLQCLHVLANAGRGVYPLWNVVMGQSYLRDNHVMIPVEFSRDFWEWKHQA VKLIQVADNIHPKNNSKKEWFMKVKKQKTKAQMYMGKHD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007991 [exp]	0	1
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10032324 [exp]	5.2	0.7992
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10008698 [exp]	5.7	0.7592
AT4G20820			FAD-binding Berberine family p...		Lus10023376 [exp]	6.6	0.8055
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10005917 [exp]	7.7	0.7745
AT2G26975			Ctr copper transporter family ...		Lus10017205 [exp]	8.3	0.7973
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10024050 [exp]	9.1	0.8048
AT2G40170		GEA6, ATEM6	LATE EMBRYOGENESIS ABUNDANT 6,...		Lus10030394 [exp]	11.2	0.7915
					Lus10033534 [exp]	13.0	0.7979
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10026598 [exp]	13.4	0.7381
AT2G14378			Protein of unknown function (D...		Lus10034455 [exp]	14.5	0.7979

Compare expression of checked genes

Lus10007991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.