Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80680 1266 / 0 NUP96, SAR3, MOS3, PRE PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) AT1G10390 167 / 4e-42 Nucleoporin autopeptidase (.1.2) AT1G59660 139 / 4e-33 Nucleoporin autopeptidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040555 [exp] 887 / 0 AT1G80680 605 / 0.0 PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) Lus10033254 [exp] 137 / 1e-32 AT1G10390 1023 / 0.0 Nucleoporin autopeptidase (.1.2) Lus10008288 [exp] 136 / 2e-32 AT1G10390 1013 / 0.0 Nucleoporin autopeptidase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G180100 [exp] 1496 / 0 AT1G80680 1272 / 0.0 PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) Potri.011G148800 [exp] 152 / 2e-37 AT1G10390 606 / 0.0 Nucleoporin autopeptidase (.1.2) Potri.001G453200 [exp] 150 / 2e-36 AT1G10390 684 / 0.0 Nucleoporin autopeptidase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12110 [flax] [poplar] Nup96 Nuclear protein 96 CL0661 [flax] [poplar] Gain PF04096 [flax] [poplar] Nucleoporin2 Nucleoporin autopeptidase
Representative CDS sequence Show only first row Show all	>Lus10007993 pacid=23164440 polypeptide=Lus10007993 locus=Lus10007993.g ID=Lus10007993.BGIv1.0 annot-version=v1.0 ATGTTCAATGCTTGCTGGAAAGTGTATGTCGGGCGCTGGAGCGGGAGTTCCTGTGGAGTGGAGTTTGATGTCCCATCTTCCGATTCACGAACACAGTACA AGAGAAGGCGAATTTCCTCCCGGGACTTAGGAGAGGTAGAAGCTTCGTTACCCCTTTTAACTTCACCAGATTATTACACGGAGCCTTGCTTGGCCAATTT GGCTGCCAGGGAATTTCTAGATCCTGGTTATTGTGGTCGAGTTCCCAATTTCACTGTTGGGAAGTTTGGTTATGGGTGTGTCAAGTTTCTTGGAAACACT GATGTTAGGAAGCTAGAAGTGGATCACATTGTTAAGTTCAATAGGCATCAAATTGTCGTATATGGAGATGAAAGTACCAAGCCTGCAGTTGGTCAGGGGC TCAACAAGCCTGCTGAAGTGACTCTGAAATTAAAATTAAGACCATTTGATTCATCTAAACAGCATTACAATGCTATTGTGAAGAAACTGAGGTTAAGCTT GGAGAGGCAGGGAGGTAGGTTCATTTCTTTCAACCCCAATAATGGTAATTGGAGTTTCTTAGTCCAACATTTTAGTCGATTTGGATTGACTGAAGATGAT GAAGAAGACATCGGTATGGATGATGTTGAGGAAGTTCATGATCCTTCCAAGATCAACGATGCTGAGATCATGGAGAATGGGGAATCACAAGAAGAAATGG AACCTACTGGGCCTATGCTTTATCATTCTCTACCTGCACATCTTGGCCTTGACCCAATAAAGATGAGAGAGATGAAGATGTTGATGTTTCCTGTTGAGGA TGAGGAAGAGGTTGAAGATTTGACTGACCTCTCTCATCCCAACTTGTCCAGAAGTAAAGAACATATGAGACGTTCATTTCTGAATAGTTCTCAGAGAATG AGTCACAGATCTAGTATGCCTGTGGTGAGGAAACCACCATTGCCTCTGCTTGAATACAATCTTGCTGAGAACAACTCAGATTCTCCTGGAAACATATTAA TGGCCCAACAAAACAAGGGCTTATCTTTAAAGCCAATTAGAGGTGAGGGCTTCAAGCTGAACCTGGAACGCCAGACACCAGTAAGTGGAAGTCATTCTCG CAACATAGTTGATGCTGGTTTGTTCATGGGCAAATCATTCCGCGTTGGGTGGGGTCCAAATGGAGTTCTTCTCCATTCGGGTACTCCTGTAAGAAGTAAC AGCTCTGAAAGATGGTTATCTTCTGTCATAAACATAGAGAAGGTTGGCATTGACAAAGTTGTTAGAGATGAAAATGATAAAACCAGAAAGGAACTGGTTG AGTTTGCGTTTGATGCACCCTTGAATCTCCATAAGTCACTAAATCATGATCTGAAACAAGTTCAAGTTGGGTCATATGCTCTGAAGCTTCAAAAGGTAAT CACGAATAAGTTGGCTCTTGCTGAAATTTGTCGGAGTTATATAGATATAATTGAGGGGCAGCTGGAGGTTCCTGGACTGTCATCATCCTCACGTTTGGTT TTGATGCATCAAGTGCTTATCTGGGAGTTGATCAAAGTTCTCTTTTCCGAGAGAGAAAATAGTGACCCACCAAAATCTTTGGCTGCTGATAACGAGGAAG ATATGATGCCAGATGTGAAAGAAGGTAGTCAACAAATAGACCCAGAAGCAGTTTCGCTTATTAGAAGAGCAGAGTTCAGCTGTTGGTTGCAAGAAAGTGT ATGCCATCGTGTCCAAGAGGATGTGAGCGCTTTGGATGAATCCAGTTATCTCAGACACATTTTTTTACTTCTTACTGGGAGGCAACTCGATGCTGCTGTT GAAATGGCTGTTTCTAGAGGGGATGTAAGGTTGGCTTGTTTGCTCAGTCAGGCTGGTGGATCGACTGTTAATCGTGATGATATTGCACACCAGCTTGATC TTTGGAGGACTAATGGGCTGGATTTCAATTTTGTTGAGAAGGAGAGGACTAGGCTTTATGAGCTGCTTTCTGGTAATATTCACAATGCCTTGGAGGGTGT TAAAATTGACTGGAAAAGATTCTTAGGATTGTTGATGTGGTATCGTCTACCACCTGATACACCATTGCCTGTCATTTTCCAAAATTATCAACTTCTCCTC CATGAAGGTAAAGCTCCATTTCCTCTTCCAATTTATATTGATGAAGGCCCAGTGGAAGAGGCACTGGGAGTTGCGGAAAAGAACATTGATCTCACATATT ATCTCATGCTTCTTCATGCCAATGGGGAGGGTAAATTTGGCTATCTGAAGACCATGCTCAGTAATTTCTCTTCAACATATGATCCACTGGACTACCATAT GATTTGGCATCAGAGAGCAGTGCTAGAGGCAGCTGGTGTGTTTACTTCTAGTGATCTTCAAGTGCTTGACATGGGGATTGTTTCCCAGTTGTTGGGTACT GGACAATGTCATTGGGCCATCTATGTGGTGCTTCACATGCCACAGTGTGATGATTATCCACACTTCCATGCTTCTGTTATTCGAGAAATATTATTTCAGT ATTGTGAAACTTGGAGTTCAGATGAATCGCAACACCAATTCATTCAGAACCTTGAAATCCCATCAGAGTGGCTGCATGAAGCTATGGCAGTATATTTCAG TTATTACGGGAATCTGTCCAAGGCCCTTGAACACTTCCTTGAATGTGCAAAATGGCAGAAGGCTCATTCTATTTTTACAACCTCGGTTGCTCATACATTG TTTTTGTCTGGTGATCATTCAGAAGTTTGGAGGCTTGCTACATTAATGGAGGAGCACAAATCTCAAATTGAAGACTGGGAATTGGGAGCAGGAATCTACA TTTCCTTCTTCGTGCTTAAAAGTTCATTTGAAGAGGATAACAACACAATGAACGAAGAGGACCCTCTTGCAAGCAAAATTTCCGACTGTGACGACTTCCT TAGTCAACTTAATGAATCTCTGGCAGTTTTGGGTGACCGGTTGCCTACTGATGCAAGGATTGCGTACTCAAAGATGGGAGAGGAGGTATCTGAGATGCTG CTCTCAATTAGTAGTTTGGGCGAGTCACGGGACAGCCAGTTGAAATGCTTTGACACAGTTCTCAAGGCTCCAGTACCTGAAGATGTATGCTCAAATCATC TGCAGGATGCCGTCTCTCTTTTTACATGTTATCTATCGGAGATGGCCGCACAATCCGTTTAA
AA sequence Show only first row Show all	>Lus10007993 pacid=23164440 polypeptide=Lus10007993 locus=Lus10007993.g ID=Lus10007993.BGIv1.0 annot-version=v1.0 MFNACWKVYVGRWSGSSCGVEFDVPSSDSRTQYKRRRISSRDLGEVEASLPLLTSPDYYTEPCLANLAAREFLDPGYCGRVPNFTVGKFGYGCVKFLGNT DVRKLEVDHIVKFNRHQIVVYGDESTKPAVGQGLNKPAEVTLKLKLRPFDSSKQHYNAIVKKLRLSLERQGGRFISFNPNNGNWSFLVQHFSRFGLTEDD EEDIGMDDVEEVHDPSKINDAEIMENGESQEEMEPTGPMLYHSLPAHLGLDPIKMREMKMLMFPVEDEEEVEDLTDLSHPNLSRSKEHMRRSFLNSSQRM SHRSSMPVVRKPPLPLLEYNLAENNSDSPGNILMAQQNKGLSLKPIRGEGFKLNLERQTPVSGSHSRNIVDAGLFMGKSFRVGWGPNGVLLHSGTPVRSN SSERWLSSVINIEKVGIDKVVRDENDKTRKELVEFAFDAPLNLHKSLNHDLKQVQVGSYALKLQKVITNKLALAEICRSYIDIIEGQLEVPGLSSSSRLV LMHQVLIWELIKVLFSERENSDPPKSLAADNEEDMMPDVKEGSQQIDPEAVSLIRRAEFSCWLQESVCHRVQEDVSALDESSYLRHIFLLLTGRQLDAAV EMAVSRGDVRLACLLSQAGGSTVNRDDIAHQLDLWRTNGLDFNFVEKERTRLYELLSGNIHNALEGVKIDWKRFLGLLMWYRLPPDTPLPVIFQNYQLLL HEGKAPFPLPIYIDEGPVEEALGVAEKNIDLTYYLMLLHANGEGKFGYLKTMLSNFSSTYDPLDYHMIWHQRAVLEAAGVFTSSDLQVLDMGIVSQLLGT GQCHWAIYVVLHMPQCDDYPHFHASVIREILFQYCETWSSDESQHQFIQNLEIPSEWLHEAMAVYFSYYGNLSKALEHFLECAKWQKAHSIFTTSVAHTL FLSGDHSEVWRLATLMEEHKSQIEDWELGAGIYISFFVLKSSFEEDNNTMNEEDPLASKISDCDDFLSQLNESLAVLGDRLPTDARIAYSKMGEEVSEML LSISSLGESRDSQLKCFDTVLKAPVPEDVCSNHLQDAVSLFTCYLSEMAAQSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Lus10007993 [exp]	0	1
AT4G10320			tRNA synthetase class I (I, L,...		Lus10041706 [exp]	2.0	0.9204
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10042094 [exp]	3.5	0.9045
AT3G58560			DNAse I-like superfamily prote...		Lus10029338 [exp]	4.0	0.8961
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008726 [exp]	4.9	0.9017
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	12.3	0.8931
AT3G17900			unknown protein		Lus10036712 [exp]	12.4	0.8572
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10036506 [exp]	14.0	0.8954
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	14.3	0.8934
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10015446 [exp]	17.3	0.8844
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10038974 [exp]	18.3	0.8403

Compare expression of checked genes

Lus10007993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.