Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29670 265 / 5e-87 ACHT2 atypical CYS HIS rich thioredoxin 2 (.1.2) AT4G26160 232 / 3e-74 ACHT1 atypical CYS HIS rich thioredoxin 1 (.1) AT1G08570 157 / 3e-45 ACHT4 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) AT2G33270 153 / 2e-43 ACHT3 atypical CYS HIS rich thioredoxin 3 (.1) AT5G61440 149 / 3e-42 ACHT5 atypical CYS HIS rich thioredoxin 5 (.1) AT1G55190 93 / 9e-22 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT3G13720 83 / 2e-18 PRA8, PRA1.F3 PRENYLATED RAB ACCEPTOR 1.F3, PRA1 (Prenylated rab acceptor) family protein (.1) AT3G13710 79 / 7e-17 PRA1.F4 prenylated RAB acceptor 1.F4 (.1) AT3G56110 78 / 2e-16 PRA1.B1 prenylated RAB acceptor 1.B1 (.1.2) AT5G01640 77 / 7e-16 PRA1.B5 prenylated RAB acceptor 1.B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040554 [exp] 739 / 0 AT4G29670 265 / 7e-87 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10019087 [exp] 166 / 3e-48 AT1G08570 223 / 4e-73 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10015711 [exp] 165 / 9e-48 AT1G08570 220 / 2e-71 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10020254 [exp] 163 / 8e-47 AT1G08570 318 / 1e-109 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10002640 [exp] 161 / 5e-46 AT1G08570 320 / 2e-110 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10026878 [exp] 159 / 3e-45 AT1G08570 332 / 7e-115 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10003437 [exp] 157 / 2e-44 AT1G08570 324 / 4e-112 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10005088 [exp] 103 / 1e-25 AT1G55190 199 / 3e-65 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10034363 [exp] 103 / 1e-25 AT1G55190 197 / 1e-64 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G066500 [exp] 309 / 4e-104 AT4G29670 253 / 3e-85 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.006G150700 [exp] 300 / 8e-101 AT4G29670 259 / 9e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.019G031900 [exp] 160 / 1e-45 AT1G08570 325 / 4e-112 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Potri.013G061200 [exp] 157 / 2e-44 AT1G08570 295 / 4e-100 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Potri.003G035200 [exp] 94 / 5e-22 AT1G55190 161 / 2e-50 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 84 / 1e-18 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.002G043800 [exp] 81 / 2e-17 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G219100 [exp] 81 / 2e-17 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G044000 [exp] 73 / 8e-15 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.010G183300 [exp] 71 / 5e-14 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin CL0172 [flax] [poplar] PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10007994 pacid=23164431 polypeptide=Lus10007994 locus=Lus10007994.g ID=Lus10007994.BGIv1.0 annot-version=v1.0 ATGGCAGATGCTATTCGATTACTATCATCTGGGCTTTCTTCCTCGCTGCTTACAACTCCGAGCTCGAATTCCTCCTCTTCCCAACCGTCTATTTCATCCT TGGGCGCAGTTTCAGATAGGAAGGCTGCCCCCGTTTTGCTCATCTCTTCTGCTGGTGTTTCCCGCTTTCTTCTTTCTCCCAGGAGGCATTTGCTCTGCTC AAAGGTACATGCTACGATTACCGAGACTGATCAGCCAAAATGGTGGGAGAGAAATGCAGGACCAAATATGATTGATATTCATTCAACTGAAGAATTCTTA AGTGCCTTGAGTGAAGCTGGAGAGAAATTGGTTATTGTTGAATTTTATGGAACATGGTGCGCTTCCTGCCGAGCATTGTTCCCCAAGCTGTGCAAAACTG CGCAAGAACACCCAGAGATTGTATTCCTAAAGGTGAACTTCGATGAAAACAAGCCAATGTGTAAAAGCTTGAATGTAAAAGTGCTTCCTTTCTTCCATTT CTACCGAGGCTCAGAAGGACAATTAGAATCCTTCTCTTGTTCACTCGCTAAGTTTCAAAAGATAAAAGATGCGATTGCGACGCACAATACAGAACGTTGC AGCATCGGTCCACCCAAGGGTGTAGGAGGAATCACTCTCGATTCAATTGCTGCTGCTCCGAAGAACAATCCTCCTCCAACGGAAGAAATGACGAGATACG GAACAATACAATCCCAATCACAATCACAGCCGCTGCCAGGAATTTCGCCAATCTCTCTTCAAAGTATAAGATCCACCTTCGGAAACCTCATTGCCACAGC AAAACCATGGAAGCTAATGATCCAACCCCAATACCTAACCTTCCCTTCCACATTAAACCAATCACTCGACAGAATTAACGTCAACGCTGCTTTCTTCCGC AGCAATTACGCCATCCTCGTTTCCTGTGCTCTCTTCATCTCCTTGCTATGGCATCCCTTTTCCTTCATCGTCTCCCTCCTCCTCGCCGCGGCTTGGTTCT TCCTCTACCTTCATCGGGAAGATGGCAATCCCTTGGCCATTAATGGCCAAGTCGTCGGTCAGAAAACTATTCTCTCATCGCTGTTGTCGGCCACCATGCT GGTGCTTTTTTTTACGGAGGTAACTGAGGACATCGTCGTCGGACTCTTAGCCGGGGTAGTGTTGATCGTTGCCCATGGGGCGTTGAGGGAGACAGATGAC CTGTCAATGATGATCGGCGGTGAAGGAGTTGTGCACGATCTGGAAGCAAATAGATCGACATCGGTTATAGTTCCGGGCTCATACCGTGATATTGACTATA ATAGTATAACTGCAGCGCCTAAGCCTCTCAGGTGA
AA sequence Show only first row Show all	>Lus10007994 pacid=23164431 polypeptide=Lus10007994 locus=Lus10007994.g ID=Lus10007994.BGIv1.0 annot-version=v1.0 MADAIRLLSSGLSSSLLTTPSSNSSSSQPSISSLGAVSDRKAAPVLLISSAGVSRFLLSPRRHLLCSKVHATITETDQPKWWERNAGPNMIDIHSTEEFL SALSEAGEKLVIVEFYGTWCASCRALFPKLCKTAQEHPEIVFLKVNFDENKPMCKSLNVKVLPFFHFYRGSEGQLESFSCSLAKFQKIKDAIATHNTERC SIGPPKGVGGITLDSIAAAPKNNPPPTEEMTRYGTIQSQSQSQPLPGISPISLQSIRSTFGNLIATAKPWKLMIQPQYLTFPSTLNQSLDRINVNAAFFR SNYAILVSCALFISLLWHPFSFIVSLLLAAAWFFLYLHREDGNPLAINGQVVGQKTILSSLLSATMLVLFFTEVTEDIVVGLLAGVVLIVAHGALRETDD LSMMIGGEGVVHDLEANRSTSVIVPGSYRDIDYNSITAAPKPLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10007994 [exp]	0	1
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10040554 [exp]	1.0	0.9344
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	1.4	0.9001
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	3.0	0.8945
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	3.5	0.8875
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10001656 [exp]	3.6	0.8421
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10038819 [exp]	4.0	0.8694
AT2G24395			chaperone protein dnaJ-related...		Lus10020173 [exp]	4.5	0.8819
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015318 [exp]	5.2	0.8666
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10019578 [exp]	5.9	0.8781
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10003690 [exp]	6.0	0.8811

Compare expression of checked genes

Lus10007994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.