Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26210 224 / 1e-76 Mitochondrial ATP synthase subunit G protein (.1.2) AT4G29480 221 / 3e-75 Mitochondrial ATP synthase subunit G protein (.1) AT2G19680 217 / 1e-73 Mitochondrial ATP synthase subunit G protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040553 [exp] 251 / 4e-87 AT4G26210 228 / 9e-79 Mitochondrial ATP synthase subunit G protein (.1.2) Lus10040544 [exp] 251 / 4e-87 AT4G26210 228 / 9e-79 Mitochondrial ATP synthase subunit G protein (.1.2) Lus10001771 [exp] 246 / 3e-85 AT4G26210 224 / 3e-77 Mitochondrial ATP synthase subunit G protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G055700 [exp] 223 / 2e-76 AT4G26210 210 / 9e-72 Mitochondrial ATP synthase subunit G protein (.1.2) Potri.006G232000 [exp] 214 / 1e-72 AT4G29480 212 / 2e-72 Mitochondrial ATP synthase subunit G protein (.1) Potri.006G231900 [exp] 207 / 9e-70 AT4G29480 181 / 3e-60 Mitochondrial ATP synthase subunit G protein (.1) Potri.018G055501 [exp] 129 / 5e-39 AT2G19680 130 / 2e-40 Mitochondrial ATP synthase subunit G protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04718 [flax] [poplar] ATP-synt_G Mitochondrial ATP synthase g subunit
Representative CDS sequence Show only first row Show all	>Lus10007995 pacid=23164443 polypeptide=Lus10007995 locus=Lus10007995.g ID=Lus10007995.BGIv1.0 annot-version=v1.0 ATGGCGCTGGCGATCGTGCTTTTAGCTTCTTTGAAATTGCTTTTTGGCTGTGGGATTTTATGGATCTTGAGGCAGATGATATTTTATATTCCTGTTTGTA GGGATTTGAATCTTTTTCCGGCACCATTTCAGGTCTTGGAACTGATGGCGTCCAAATTAATGCAATTGCAATCTAAAGCTTGCCAAGCGTCTAAGTTTGT GTCTAAGCATGGCACTACCTACTACAAACAGTTACTGGAACAGAACAAGAAATACATTCAGGAGCCCGCTAGTGTTGAGAAGTGCAATGAATTGTCTAAG CAATTGTTTTACACTCGGCTAGCCAGTATCCCAGGTAGAAATGAAGCATTCTGGAAGGAGCTAGATTATGTGAAGAACTTGTGGAAGAACAGGCAAGAGC TAAAGGTTGAGGATGCAGGGGTTGCTGCATTGTTTGGACTTGAGTGCTTCGCATGGTATTGTGCTGGTGAAATCATAGGGAGGGGAGTCACCTTCACCGG CTACTACCCTTGA
AA sequence Show only first row Show all	>Lus10007995 pacid=23164443 polypeptide=Lus10007995 locus=Lus10007995.g ID=Lus10007995.BGIv1.0 annot-version=v1.0 MALAIVLLASLKLLFGCGILWILRQMIFYIPVCRDLNLFPAPFQVLELMASKLMQLQSKACQASKFVSKHGTTYYKQLLEQNKKYIQEPASVEKCNELSK QLFYTRLASIPGRNEAFWKELDYVKNLWKNRQELKVEDAGVAALFGLECFAWYCAGEIIGRGVTFTGYYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26210			Mitochondrial ATP synthase sub...		Lus10007995 [exp]	0	1
AT4G26210			Mitochondrial ATP synthase sub...		Lus10001771 [exp]	1.7	0.9457
AT5G20500			Glutaredoxin family protein (....		Lus10017148 [exp]	6.2	0.9170
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10027540 [exp]	8.5	0.8997
AT5G16950			unknown protein		Lus10021093 [exp]	10.6	0.8895
AT5G61970			signal recognition particle-re...		Lus10032538 [exp]	13.4	0.8959
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10003170 [exp]	13.5	0.8896
AT5G47570			unknown protein		Lus10000735 [exp]	14.7	0.8786
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023492 [exp]	17.3	0.8892
AT3G60540			Preprotein translocase Sec, Se...		Lus10011428 [exp]	18.7	0.8898
AT1G56450		PBG1	20S proteasome beta subunit G1...		Lus10036124 [exp]	19.0	0.8877

Compare expression of checked genes

Lus10007995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.