Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19580 312 / 2e-107 TET2 tetraspanin2 (.1) AT5G46700 186 / 5e-58 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT3G45600 174 / 3e-53 TET3 tetraspanin3 (.1) AT2G23810 165 / 7e-50 TET8 tetraspanin8 (.1) AT5G60220 162 / 4e-48 TET4 tetraspanin4 (.1) AT4G28050 156 / 1e-46 TET7 tetraspanin7 (.1) AT4G30430 149 / 1e-43 TET9 tetraspanin9 (.1) AT4G23410 146 / 2e-42 TET5 tetraspanin5 (.1) AT1G18520 141 / 1e-40 TET11 tetraspanin11 (.1) AT3G12090 125 / 1e-34 TET6 tetraspanin6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040551 [exp] 412 / 4e-147 AT2G19580 364 / 3e-128 tetraspanin2 (.1) Lus10008563 [exp] 348 / 7e-122 AT2G19580 411 / 1e-146 tetraspanin2 (.1) Lus10001668 [exp] 208 / 1e-66 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10017336 [exp] 204 / 3e-65 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10019965 [exp] 177 / 2e-54 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10023216 [exp] 177 / 2e-54 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10038473 [exp] 174 / 5e-53 AT3G45600 446 / 9e-160 tetraspanin3 (.1) Lus10008891 [exp] 173 / 5e-53 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10015494 [exp] 172 / 2e-52 AT2G23810 370 / 2e-130 tetraspanin8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G150400 [exp] 320 / 7e-111 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.003G093000 [exp] 215 / 1e-69 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.001G141400 [exp] 207 / 3e-66 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.006G177900 [exp] 173 / 6e-53 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.009G015100 [exp] 171 / 3e-52 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.018G099800 [exp] 164 / 3e-49 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.010G220300 [exp] 154 / 1e-45 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.008G041600 [exp] 152 / 6e-45 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.015G055700 [exp] 129 / 1e-35 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.001G107200 [exp] 110 / 8e-29 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10007998 pacid=23164432 polypeptide=Lus10007998 locus=Lus10007998.g ID=Lus10007998.BGIv1.0 annot-version=v1.0 ATGGCAGTATCAAACAACCTAACCGCAATCCTAAACTTGATAGCTTTCCTATGTTCCATCCCAATCATAGCATCCGGAATATGGTTGGCATCCCAACCTG ACAACGAGTGCATCCATTTCTACCGTTGGCCACTCGTCCTCCTCGGAGTCCTCGTCCTAGTAGTCTCCCTCACTGGCTTCGTCGGCGGCTACTGCTACAA GGAAACCCTGCTGGCCTTCTACCTCTGCTGTATGGCCATACTCATCATCCTTCTCCTCGTACTCCTCGTTTTCGCCTTCGTGGTCACTCGTCCTGACGGC AGCGTCTACATCCCTGGCCGCGGCTACAAGGAGTTTCGAATCGAAGGGTTCTCCACCTGGCTCAGGGATCACGTCGTCGACTCCAGAGACTGGGTCGGCA TTCGTGCTTGCCTTGCTGGATCAGGTGCTTGCCCAAAGTTGGCCGCGACTTACTTCTCTGCTGACCACTTCTTTGCCGGTCACATCTCTCCTATCCAGTC GGGGTGTTGTAAGCCTCCAACGGTATGTGGGTACAATTACGTGAACCCGACCCTGTGGGTGAACCCAGCAAACCCGACAGCAGATCCAGACTGCTACATG TGGAGCAACGACCAGAAGCAGCTATGCTACAACTGCAACTCTTGCAAAGCAGGGTTGCTTGGGAACCTCAGGAAAGAATGGAGGAAAATCAACACCATTC TCATTGTAGCTCTAGTTGTCCTCATCTTCGTCTATGTGGTTGCTTGCTTTGCTTTCAAGAATGCACAATTGGGTCCCTCCCACCGTGCTAATTCAAAGTA A
AA sequence Show only first row Show all	>Lus10007998 pacid=23164432 polypeptide=Lus10007998 locus=Lus10007998.g ID=Lus10007998.BGIv1.0 annot-version=v1.0 MAVSNNLTAILNLIAFLCSIPIIASGIWLASQPDNECIHFYRWPLVLLGVLVLVVSLTGFVGGYCYKETLLAFYLCCMAILIILLLVLLVFAFVVTRPDG SVYIPGRGYKEFRIEGFSTWLRDHVVDSRDWVGIRACLAGSGACPKLAATYFSADHFFAGHISPIQSGCCKPPTVCGYNYVNPTLWVNPANPTADPDCYM WSNDQKQLCYNCNSCKAGLLGNLRKEWRKINTILIVALVVLIFVYVVACFAFKNAQLGPSHRANSK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19580		TET2	tetraspanin2 (.1)		Lus10007998 [exp]	0	1
AT3G11320			Nucleotide-sugar transporter f...		Lus10009878 [exp]	1.7	0.8364
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10030359 [exp]	6.6	0.7791
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	9.1	0.8284
AT5G06750			Protein phosphatase 2C family ...		Lus10021056 [exp]	11.3	0.8009
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10019777 [exp]	13.5	0.7241
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10014889 [exp]	14.1	0.7940
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010410 [exp]	14.3	0.7193
AT1G07710			Ankyrin repeat family protein ...		Lus10015224 [exp]	20.2	0.7610
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10036716 [exp]	21.0	0.7459
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10025912 [exp]	21.9	0.8108

Compare expression of checked genes

Lus10007998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.