Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19600 471 / 5e-163 ATKEA4 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) AT5G11800 464 / 3e-160 ATKEA6, KEA6 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) AT5G51710 379 / 2e-127 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040549 [exp] 602 / 0 AT2G19600 851 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10008002 [exp] 568 / 0 AT2G19600 781 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10031106 [exp] 395 / 2e-133 AT5G51710 907 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10031687 [exp] 354 / 1e-117 AT5G51710 833 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10008000 [exp] 63 / 4e-11 AT5G51710 149 / 3e-42 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10018844 [exp] 43 / 0.0005 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G230400 [exp] 462 / 9e-160 AT5G11800 731 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.018G054100 [exp] 459 / 1e-158 AT5G11800 740 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.012G130500 [exp] 400 / 2e-135 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.015G132400 [exp] 389 / 4e-131 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.014G080800 [exp] 43 / 0.0004 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10007999 pacid=23164437 polypeptide=Lus10007999 locus=Lus10007999.g ID=Lus10007999.BGIv1.0 annot-version=v1.0 ATGAGATTGCTCCTAGCTTCGGCTGTACTTTGCGCTCTTCTTCTCTTCTTCCCGCCCTCTGACTCCGCCAATGAAGAGTGGAACTCAACGAAGGTAAATG CAAGCACAGATTCCAACTCTACTGGACTCAGATCCAGGGAGGACACCTTCGCTTTCATGATCGATCGCGCGCTGGAGAAGGAGTTCAACGAGACAGAGCA GAATCAAGCCACTGATCCGGACAGCTTCAATAACAGCGTTGCCGGGCAGCAGGCAGTTCTGGAGACAGTGGCTAGGGTTACAACGAAGAAAAACGAGTCT AAGGAGGAGAAGTCTTTTCAGTTTCATAATGTTTTCAATTTGGACAATGAAAATCGTGCAGAAGATGCCGCACGATTAATTGATCGAAAGGATAATGTCT TTATCATATCAAATCCGAAGTCCAAATATCCTGTGCTACAACTTGACTTAACTTTGATATCAGATCTGGTGGTTGTCATTGTGTCTACTGCTTGCGGGGG AGTAGCATTTGCTTGTGCTGGTCAACCGGTATTTAGCGGATACCTGCTAGCAGGGTCTGTGATTGGGCCAGGGGGATTCAGCGTTGTAAGCGAAATGGTG CAAGTTGAGACAGTTGCACAATTTGGTGTCATATTCCTTCTGTTTGTCCTGGGTCTGGAGTTTTCCATCACCAAGCTTCGTGTTGTCCGAGCAGTTGCAG TTGTTGGAGGTCTTCTCCAGATTTCGCTCTTTATGTGTCTTTGTGGGTTAACAGCCTCGTTATGCGGGGGTAAGCCTTCTGAGGGCATCTTTGTAGGTGC ATTCCTCTCAATGTCTTCAACTGCAGTGCATAAATACCCTCTATGGCCAGGTCACTTTGGTAACCTCATTCTGCAGGATTGTGCAGTTGGTCTGCTGTTT GCTTTACTTCCTGTTCTTGGTGGTACTTCTGGTGTTCTTCAGGGAGTGATATCCATGACTAAGTTGTTAGTGCTGCTGCTTGCATTTTTGACCACTTTAA CAATATTGTCTCGTACCTGTGTGCCATGGTTTCTTAAGCTTATGATAAGCTTATCGTCTCAGACTAATGAACTCTATCAGCTGGCATCAGTGGCGTTCTG CCTGCTTGTCGCATGGTGTAGTGACAAGTTGGGTCTCAGCCTTGAACTAGGATCATTTGCTGCAGGTGTGATGATATCCACGACTGATCTTGCCCACCAT ACACTCGAGCAAGAGATGTGA
AA sequence Show only first row Show all	>Lus10007999 pacid=23164437 polypeptide=Lus10007999 locus=Lus10007999.g ID=Lus10007999.BGIv1.0 annot-version=v1.0 MRLLLASAVLCALLLFFPPSDSANEEWNSTKVNASTDSNSTGLRSREDTFAFMIDRALEKEFNETEQNQATDPDSFNNSVAGQQAVLETVARVTTKKNES KEEKSFQFHNVFNLDNENRAEDAARLIDRKDNVFIISNPKSKYPVLQLDLTLISDLVVVIVSTACGGVAFACAGQPVFSGYLLAGSVIGPGGFSVVSEMV QVETVAQFGVIFLLFVLGLEFSITKLRVVRAVAVVGGLLQISLFMCLCGLTASLCGGKPSEGIFVGAFLSMSSTAVHKYPLWPGHFGNLILQDCAVGLLF ALLPVLGGTSGVLQGVISMTKLLVLLLAFLTTLTILSRTCVPWFLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAHH TLEQEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10007999 [exp]	0	1
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10041607 [exp]	2.8	0.8487
AT5G06120			ARM repeat superfamily protein...		Lus10024115 [exp]	3.0	0.9185
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10033317 [exp]	3.7	0.8292
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10008002 [exp]	4.2	0.8202
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10018129 [exp]	7.5	0.8542
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	7.9	0.8170
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010675 [exp]	8.0	0.8263
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10033864 [exp]	12.4	0.8555
AT1G73430			sec34-like family protein (.1....		Lus10000075 [exp]	16.4	0.8312
AT2G32900		ATZW10	centromere/kinetochore protein...		Lus10035358 [exp]	19.1	0.7561

Compare expression of checked genes

Lus10007999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.