Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11800 127 / 4e-34 ATKEA6, KEA6 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) AT2G19600 126 / 1e-33 ATKEA4 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) AT5G51710 117 / 1e-30 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040549 [exp] 145 / 8e-41 AT2G19600 851 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10008002 [exp] 130 / 3e-35 AT2G19600 781 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10031687 [exp] 108 / 2e-27 AT5G51710 833 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10031106 [exp] 108 / 3e-27 AT5G51710 907 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10027602 [exp] 76 / 5e-17 ND / Lus10036316 [exp] 65 / 3e-12 ND 42 / 4e-04 Lus10007999 [exp] 62 / 2e-11 AT2G19600 569 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G230400 [exp] 135 / 5e-37 AT5G11800 731 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.018G054100 [exp] 135 / 6e-37 AT5G11800 740 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.015G132400 [exp] 123 / 9e-33 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.012G130500 [exp] 120 / 2e-31 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10008000 pacid=23164438 polypeptide=Lus10008000 locus=Lus10008000.g ID=Lus10008000.BGIv1.0 annot-version=v1.0 ATGGTGAAAAATACCAAACTTGCAACAACCCGAGTTGATTCAGAGCTTGGTGGTCATGCTACATCTATAGCATACTCTGACAATATTGGTTGTCATAACA TGGAGGAGACCTCACATTATGTTGGTCACCAACTAGAGGAAGATGTAGATGATAACAAGGCTGAAGACGTACCTGGAAATGATAGTGAGGCATCAAGCGA GGATGATGATGGTTCCTACATTGGGGAGATGCATCCTAATGAAGAGGATTTTAATGTCGAGTTGGGAGGAGTAGGGGCATCATCGTCTCATGCCCCTCCA AGAGAGTTGACACCCTTTGACAAGTTGGGTCTCAGCCTTGAACTAGGATCATTTGCTGCAGGTGTGATGATATCCACGACTGATCTTGCCCACCATACAC TCGAGCAAGTAGAACCAATTCGAAACTTCTTTGCAGCTCTGTTCTTGGCAAGCATTGGGATGTTGATAGATGTCCATTTCTTATGGAATCATGTTGATAT ACTACTTGCTTCGGTACTGTTAGTGATTGTTGTCAAAACTATTATTACTGCGTCTGTTGTCAAGGGATTTGGATACAACAATAAGACTGCACTTCTTATA TTTCCTAGTTAG
AA sequence Show only first row Show all	>Lus10008000 pacid=23164438 polypeptide=Lus10008000 locus=Lus10008000.g ID=Lus10008000.BGIv1.0 annot-version=v1.0 MVKNTKLATTRVDSELGGHATSIAYSDNIGCHNMEETSHYVGHQLEEDVDDNKAEDVPGNDSEASSEDDDGSYIGEMHPNEEDFNVELGGVGASSSHAPP RELTPFDKLGLSLELGSFAAGVMISTTDLAHHTLEQVEPIRNFFAALFLASIGMLIDVHFLWNHVDILLASVLLVIVVKTIITASVVKGFGYNNKTALLI FPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10008000 [exp]	0	1
					Lus10014737 [exp]	3.0	0.9920
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	4.2	0.9920
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	5.2	0.9920
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	6.0	0.9920
					Lus10021773 [exp]	6.7	0.9920
AT4G27170		SESA4, AT2S4	seed storage albumin 4 (.1)		Lus10040395 [exp]	7.3	0.9920
					Lus10039552 [exp]	7.9	0.9920
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10035900 [exp]	8.5	0.9920
					Lus10019558 [exp]	9.0	0.9920
					Lus10012677 [exp]	10.0	0.9820

Compare expression of checked genes

Lus10008000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.