Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31940 82 / 6e-21 unknown protein AT5G19875 77 / 6e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024507 [exp] 153 / 1e-48 AT5G19875 104 / 8e-30 unknown protein Lus10006311 [exp] 95 / 2e-25 AT5G19875 83 / 3e-21 unknown protein Lus10034527 [exp] 40 / 0.0001 AT5G19875 52 / 2e-09 unknown protein Lus10026283 [exp] 39 / 0.0004 AT2G21180 99 / 2e-27 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009200 [exp] 92 / 2e-24 AT5G19875 72 / 5e-17 unknown protein Potri.001G231300 [exp] 73 / 3e-17 AT5G19875 69 / 8e-16 unknown protein Potri.009G024500 [exp] 71 / 2e-16 AT2G31940 96 / 2e-26 unknown protein Potri.003G216100 [exp] 68 / 2e-15 AT5G19875 86 / 1e-22 unknown protein Potri.004G167700 [exp] 50 / 1e-08 AT2G21180 91 / 2e-24 unknown protein Potri.009G129200 [exp] 45 / 7e-07 AT2G21180 55 / 2e-10 unknown protein Potri.001G009300 [exp] 44 / 2e-06 AT5G19875 51 / 3e-09 unknown protein Potri.009G129301 [exp] 41 / 9e-05 AT5G42146 45 / 8e-06 unknown protein Potri.003G216000 [exp] 40 / 0.0001 AT5G19875 44 / 1e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008006 pacid=23161760 polypeptide=Lus10008006 locus=Lus10008006.g ID=Lus10008006.BGIv1.0 annot-version=v1.0 ATGGCTGGAGGATACTACTACAGCAACAACAATTACTATTCATCCTACTGGGACTACCTCTTCTCCAACATCTCCTCCATCCCACTCCAACTCTACTTCT TCATGGCCATACTCGTCTCCGTTCTGGGAATCTCATGGTACATCCACTATGAGTCTGTCATCGAAGACTTGATGAACCAGATCAAGTTCATCCTCATCCT CTCCCCTATCCTTTTGCTCCTCCTCCTTCACTGTATTTCCGCTACTTCAGCGGGTGGTGGCCGCTTCCCTAATTTCTGCGTGCCTAATTTGCCAGCTGAT CAGAGGGATCGAGCAGGGGGGTCTCCATGGGGTGTTGCTCTTCTTTTGGTCTTTCTTTTGTTCATGATCTCTTACCAGTCTTCTCTCCATGAACGATGGT TCCCTTTCATTTCCAAATGA
AA sequence Show only first row Show all	>Lus10008006 pacid=23161760 polypeptide=Lus10008006 locus=Lus10008006.g ID=Lus10008006.BGIv1.0 annot-version=v1.0 MAGGYYYSNNNYYSSYWDYLFSNISSIPLQLYFFMAILVSVLGISWYIHYESVIEDLMNQIKFILILSPILLLLLLHCISATSAGGGRFPNFCVPNLPAD QRDRAGGSPWGVALLLVFLLFMISYQSSLHERWFPFISK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19875			unknown protein		Lus10008006 [exp]	0	1
AT1G67110		CYP735A2	"cytochrome P450, family 735, ...		Lus10006246 [exp]	4.9	0.8640
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028886 [exp]	11.0	0.8460
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10040863 [exp]	24.0	0.8333
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10012777 [exp]	26.7	0.8456
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	29.1	0.8326
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10009138 [exp]	31.6	0.8177
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	32.4	0.8357
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020359 [exp]	32.6	0.8442
AT3G06890			unknown protein		Lus10037501 [exp]	32.9	0.8079
					Lus10003852 [exp]	33.9	0.8249

Compare expression of checked genes

Lus10008006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.