Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11660 307 / 2e-102 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) AT5G62020 256 / 1e-83 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT1G46264 198 / 2e-60 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT4G36990 186 / 1e-56 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT2G41690 169 / 1e-50 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) AT4G17750 159 / 5e-44 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT1G32330 155 / 5e-43 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT3G02990 150 / 6e-41 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT3G22830 143 / 6e-39 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT5G03720 143 / 6e-39 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024508 [exp] 531 / 0 AT4G11660 308 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10014994 [exp] 255 / 4e-83 AT5G62020 259 / 2e-85 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10019348 [exp] 200 / 5e-62 AT4G36990 254 / 3e-84 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10009351 [exp] 194 / 1e-59 AT4G36990 248 / 1e-81 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10001133 [exp] 197 / 3e-59 AT1G46264 319 / 4e-107 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10042646 [exp] 197 / 3e-59 AT1G46264 308 / 8e-103 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10038874 [exp] 174 / 4e-52 AT4G11660 192 / 4e-60 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10036062 [exp] 164 / 9e-48 AT1G46264 245 / 3e-79 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10030956 [exp] 166 / 8e-47 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108100 [exp] 377 / 1e-130 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Potri.012G138900 [exp] 236 / 6e-76 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.015G141100 [exp] 229 / 2e-73 AT5G62020 233 / 8e-76 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.007G043800 [exp] 207 / 1e-64 AT4G36990 241 / 3e-79 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Potri.002G124800 [exp] 197 / 4e-60 AT1G46264 353 / 7e-121 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.014G027100 [exp] 197 / 1e-59 AT1G46264 335 / 9e-114 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.001G273700 [exp] 192 / 3e-59 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.009G068000 [exp] 188 / 2e-57 AT1G46264 258 / 4e-85 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.016G056500 [exp] 176 / 2e-53 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) Potri.003G095000 [exp] 166 / 1e-46 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10008007 pacid=23161773 polypeptide=Lus10008007 locus=Lus10008007.g ID=Lus10008007.BGIv1.0 annot-version=v1.0 ATGCCGTCGTCGCCAGTTGAAACTAGCGGCGAACCCCTCGCCATCGCCGTCGCTGCTGGGAGTGCCAGCGGCAGTGGCGGCGGCTGCGGTGGTGGAACTG GAGGAACTGCAGATTCCCAGAGAGCTCTGCCCACTCCGTTCCTTACCAAAACGTATCAGCTCGTAGACGATCCGGCTGTCGATGATTTGATTTCGTGGAA CGATGACGGATCCACTTTCATAGTCTGGCGCCCCGCGGAGTTCGCTAGAGACCTGTTGCCTAAATACTTCAAACACAACAATTTCTCCAGCTTCGTCCGC CAGCTTAATACATACGGATTCAGGAAAGTGGTGCCTGACCGATGGGAATTCGCTAACGATTGCTTCCGGCGAGGAGAGAAATCCCTGCTTCGGGATATCC AGCGGAGGAAGATCTCCGTCGCGACTGCTGTCCCCGCGGGTAATCCCTCGGTGGCCGCGATTGCTACGGGTGGTCGGACGATCTCTCCCGCGAATTCCGG AGAGGAACAGGTGATCTCGTCCACATCGTCTCCAGCGGCGAACGCAATAATCCTGCGGACGACGAGCTGCACGACGACGGCGGAGCTTCTGGATGAGAAC GAGAGGCTGAGGAAAGAGAACTCGCAGCTGAGCCACGAGTTAACTCAGTTGAGAGGTTTGTGCAACAATATAATGTCGTTGATGAATAATTACTCATCAG GTCAGGTTAACGGAAGTATAAGCAACAGCAGTCCGATTCTGTCGGAAGGGAGGCCTCTGGATTTGATGCCCTCAACCAAAGCGGGAGGAGGGACGCCGGA GACGGTTGTGGGTAATGACTCTAGAGCAACGCCGGCAGCGGTGGATCCGATCAGCCCGAGGCTGTTCGGAGTATCAATAGGAGTTAAGCGAGCGAGGATA GAGGAGGAGGAAGAGGAGGAGGTTGAGGAAGAAGAAGAATTGGGGGAAGAGGAGGAAGAGAATAGTAAGGATCGGGTGCTGGAGCTGGAGGAGAAGCCGG GTGGATCAGAGGTGAAATTAGAGCCGTTGGATCGGAGTAATAAAAAGTGCTCTGCCTCTAATGATCAGAATAAATCATGGTTGGAGCTTGGGAAATGA
AA sequence Show only first row Show all	>Lus10008007 pacid=23161773 polypeptide=Lus10008007 locus=Lus10008007.g ID=Lus10008007.BGIv1.0 annot-version=v1.0 MPSSPVETSGEPLAIAVAAGSASGSGGGCGGGTGGTADSQRALPTPFLTKTYQLVDDPAVDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVR QLNTYGFRKVVPDRWEFANDCFRRGEKSLLRDIQRRKISVATAVPAGNPSVAAIATGGRTISPANSGEEQVISSTSSPAANAIILRTTSCTTTAELLDEN ERLRKENSQLSHELTQLRGLCNNIMSLMNNYSSGQVNGSISNSSPILSEGRPLDLMPSTKAGGGTPETVVGNDSRATPAAVDPISPRLFGVSIGVKRARI EEEEEEEVEEEEELGEEEEENSKDRVLELEEKPGGSEVKLEPLDRSNKKCSASNDQNKSWLELGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10008007 [exp]	0	1
AT1G44414			unknown protein		Lus10025672 [exp]	2.6	0.9161
AT4G15248	CO		B-box type zinc finger family ...		Lus10027151 [exp]	3.2	0.9131
AT4G27310	CO		B-box type zinc finger family ...		Lus10031593 [exp]	3.3	0.8761
AT3G27250			unknown protein		Lus10032077 [exp]	4.0	0.9084
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10004977 [exp]	5.2	0.9117
AT5G08060			unknown protein		Lus10021149 [exp]	11.0	0.8975
					Lus10021347 [exp]	11.5	0.8585
AT4G02425			unknown protein		Lus10030370 [exp]	11.5	0.8404
AT5G62140			unknown protein		Lus10015008 [exp]	13.0	0.8901
AT1G74320			Protein kinase superfamily pro...		Lus10026145 [exp]	13.4	0.8947

Compare expression of checked genes

Lus10008007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.