Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04780 195 / 2e-65 MED21 mediator 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024509 [exp] 241 / 2e-83 AT4G04780 201 / 9e-68 mediator 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G017100 [exp] 204 / 6e-69 AT4G04780 207 / 2e-70 mediator 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11221 [flax] [poplar] Med21 Subunit 21 of Mediator complex
Representative CDS sequence Show only first row Show all	>Lus10008009 pacid=23161781 polypeptide=Lus10008009 locus=Lus10008009.g ID=Lus10008009.BGIv1.0 annot-version=v1.0 ATGGATATAATTTCCCAATTACAAGAACAAATCGATACGGTGGCTTCTCTTGCTTTTAACTCCATCGGAACGTTGCAGAGAGATGCTCCGCCAGTGCGGC TGTCGTCCAATTACCCTGAGCCACCGCCAGCCCCTGTCAACCCTTCAGAGGATATTGCTGAGCAGCCTAAGCAGATGGGCACTGCTCTCGTCAAAGCTGC TAAGCAGTTTGATGCTCTGGTGGCTGCACTTCCACTGTCCGAGGGTGGTGAAGAAGCTCAATTGAAAAGGATTGCTGAGCTGCAGGCTGAAAACGATGCT GTAGGTCAAGAACTCCAGAAGCAACTTGAAGCTGCTGAAAAAGAGTTGAAACAGGTTGTGGAGCTATTTGGTCAAGCGACAGACAATTGCTTGAACCTGA AGAAACCAGATTAG
AA sequence Show only first row Show all	>Lus10008009 pacid=23161781 polypeptide=Lus10008009 locus=Lus10008009.g ID=Lus10008009.BGIv1.0 annot-version=v1.0 MDIISQLQEQIDTVASLAFNSIGTLQRDAPPVRLSSNYPEPPPAPVNPSEDIAEQPKQMGTALVKAAKQFDALVAALPLSEGGEEAQLKRIAELQAENDA VGQELQKQLEAAEKELKQVVELFGQATDNCLNLKKPD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04780		MED21	mediator 21 (.1)		Lus10008009 [exp]	0	1
AT4G28240			Wound-responsive family protei...		Lus10018535 [exp]	6.9	0.8021
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	7.8	0.8170
AT1G68220			Protein of unknown function (D...		Lus10043484 [exp]	13.7	0.7971
AT2G17350			unknown protein		Lus10013847 [exp]	13.7	0.8026
AT3G60300			RWD domain-containing protein ...		Lus10009773 [exp]	16.4	0.8161
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016297 [exp]	20.6	0.8128
AT4G16530			Family of unknown function (DU...		Lus10000730 [exp]	21.3	0.7847
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10025639 [exp]	23.2	0.8070
AT2G17350			unknown protein		Lus10026564 [exp]	26.5	0.8121
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031268 [exp]	27.4	0.7825

Compare expression of checked genes

Lus10008009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.