Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41140 388 / 2e-118 Myosin heavy chain-related protein (.1.2) AT1G63300 381 / 1e-115 Myosin heavy chain-related protein (.1) AT5G52280 272 / 2e-77 Myosin heavy chain-related protein (.1) AT1G22060 133 / 4e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024517 [exp] 1764 / 0 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2) Lus10001481 [exp] 733 / 0 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2) Lus10008482 [exp] 637 / 0 AT1G63300 406 / 4e-124 Myosin heavy chain-related protein (.1) Lus10039218 [exp] 289 / 4e-83 AT5G52280 618 / 0.0 Myosin heavy chain-related protein (.1) Lus10027462 [exp] 284 / 3e-81 AT1G63300 612 / 0.0 Myosin heavy chain-related protein (.1) Lus10038860 [exp] 277 / 7e-79 AT1G63300 614 / 0.0 Myosin heavy chain-related protein (.1) Lus10014980 [exp] 252 / 3e-70 AT1G63300 537 / 9e-179 Myosin heavy chain-related protein (.1) Lus10001482 [exp] 237 / 4e-69 AT1G63300 298 / 5e-92 Myosin heavy chain-related protein (.1) Lus10020915 [exp] 142 / 6e-34 AT1G22060 985 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124600 [exp] 524 / 3e-168 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1) Potri.015G143800 [exp] 328 / 2e-96 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.001G106700 [exp] 315 / 8e-92 AT1G63300 603 / 0.0 Myosin heavy chain-related protein (.1) Potri.012G141200 [exp] 234 / 3e-63 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1) Potri.005G170066 [exp] 146 / 3e-35 AT1G22060 1031 / 0.0 unknown protein Potri.002G091700 [exp] 143 / 3e-34 AT1G22060 1546 / 0.0 unknown protein Potri.006G120400 [exp] 92 / 1e-18 AT1G22060 121 / 2e-27 unknown protein Potri.008G029800 [exp] 87 / 4e-17 AT1G22060 117 / 5e-26 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008012 pacid=23161765 polypeptide=Lus10008012 locus=Lus10008012.g ID=Lus10008012.BGIv1.0 annot-version=v1.0 ATGTTCCGTCCAGTGAGGTGGCGGAATGATAAGCACAAGATCAAAGTTGTCTTCAAGTTCCAGTTTCATGCAACTCAGGTGTCAGAATTGAAGAATGCGG AGTCTTTAGTGGTGTCTGTGGTTCCGGGGGATGTTGGGAAGCCAACTGGGAAATCAGAAAAGGCTGCAATTCGGGAAGGAAGCAGCAGCTGGGAATATCC TGTTTATGAGACAGTCAAGTTCAGCCGGGATTCCAAGACCGGGAAGATCAATGACAAAACTTACTACTTCATTTTGTCAACTGGATCAATCAAGAGCAGT ATAGTTGGGGAAGCTTTGATTGATTTAGCAGCTTATGCACAAGTTGCTAAACCTTCCCTCGTTTCTCTGCCTCTCAAGAACTCAAAGACCAGTGGGGTTT TGCATGTTACGATTCAAAAACTGCAGTCAAGTATAGATCAGAGGGAAGAGGAGGAAATTGATACTGGAAACAAAACTTTGAACACTCTCTTAAGCAATGG TGAGAGCGAGGATACCGTCAGCAGCTTTTCTAACGTAGATGTACTACTGCATACTGCAGATAATATTTCTGAACAGAATGGCATTTCTACTGTCACTAGT GGATCCGATATTACACTATCCAGTTGCGGCAGTAGCTCAGGGCTTATTAGACCAGCAGAAAATGGCTCAACAATGGTCTATGATGGACATCCCCGTACAC AATGTGAATGGTCAGTAGATTCTGATCAGGTCATGAGTGTCGATGGCTCGACAAATAGTTCTCACGAAACCCTCACAGGAGAAAGGTCGACTCAACAAAT GACAGATCTTGAGGTTGAGAGGCTTAAGGCCGAACTCGTTACAATGTCCAGACAGCTAGATCTTTCAGACCTCGAATTACAGACATTGCGCAAGCAAATT GTGAAAGAAAGCAGGAGGGGTCAGGATCTCTTAAAAGAATTACTGGGACTGAAAGAGGAGAGGGATACAATCTATGCGGAATGTGAGAAACTCAAGGGCT TCCAGAAAGGTATGGATGAAGCGAGAAGTGGAAACAAGTTGAAATCTGAAGGTGGAGATCCATGGCTTCTTATTGGAGAAATCAGACAAGAAATGTATTA TGAGAAGAACCGGAATGCCAATCTGCAGTTACAACTACAGAAGACTCAAGAATCAAATGCAGAACTGTTACTTGCTGTGAGAGAACTTGAAGAATTGTGG GAGAAAAAAGGTACTGAAACATCTGAAACACATGATGCCTTACCAAGTGAGAGTGATGACGATGATGATGAGGCGTTGGAAGAACTTATTAAGGAGCATA CTGATACGCGAGAGACATACATGCTAGACCAAAGGATTATGGATCTCACCAGGGAGATTGCGATGTACAGGAGAGACAAAGATGAGTTGGAGATGCAAAT GGAACAGCTTGCTCTTGATTATGAGATATCCAAGCAGGAGAATCACGATCTTTCATATAAGGTGGAGCAAAGCCAGTTGCAAGAACAACTCGAGATGCAG TATGAATGTTCACCGCCAACTTCCAACGAAAATACATTGGATATACAGATCGAAAGGCTGGAAGATGAATTGAAGGAGCAACGGATAGAGTACTCCGTTT CATTGACCAAGATAAAAGAACTTGAAAACCATGTCGAGATCTTGGAGAGAGAATTAAAGTTTCAAGAAGAAAGAACGTTGCAGCATGAATGCTCATCAAC TAATGCCAACACTGAGGAACTCAAAGGCCAAATTGAGAGATTGGAGAACGAACTCGAGAAGCAACAAAAGGACTATTCTGGTTCTATGGACACCATAAAT GAACTTCAAAACCGAATCAAGAGTTTGGAGGAAGAAGCAAAGCTGCAAGAATCAAGTATATTGCAACATGAAGCAGCTGCTGCTAAGATGAAGGAACTTA AAGGCCAGATTGAGAGGTTGGAGACCGAACTCAAGGACCAACAGAATCAAAATTCCGGTTTTCTGGGTACCATAAAGGAACTAGAAACTCATATCAGTAG CATGGAGGACGAGTTGGAGCAGCAATCCCAGTCGTTTGAAGTTGATCTTGAAACGATCACACGGGAAAGGGTCGAGCAAGAGCAAAGAGCCATCCGAGCA GAGGAAGCCTTACGGCTAACCAGATGGAAAAATTCTAAGAAGGCCGAGAAACTGCAAGAGGAATTCAGGAAGCTGTCTATGCAGATGGCCTCAACATTTG AAGCAAATGAGAAGGTGGCTATAAAATCAGTAGCAGAATGTAGTGAAGTCCGGATTCAGAAACGTCAATTGGAAGACATGCTTCTTAAAGCTAATTCAGA GCTAAACTATGTGAAGGGTGATTATAAGGAGAAGTTTGTAGAGCTATCCAACCAGCTAAATTTGAAAACTAATCTGGTAGAAAAGTTGTTGATTGAGATT GATGATATGTCAAAGCAGCTCAAATGCCAGAAGCAGCACGAAGAGCAACTTGGTGGAACTTTTACTCAGAAAGTTCAGAAGTTTCAGGTTGAGATTGAAA AGCTTGTGAGAGAAAATAGTATCCTTTCCATTCAAGTTGATCAACTGAAGAATGTAAAAGTGGAACTGGAGGAGATGAAGCAGTCAGTGAAGGAACATGA AGAACTGGTTCAGAAGGGAAATGCAGAGAGGAAAGAACTCGTAACGACTATTGCTTTATTGAAGAAAGAAGCAGAGAAATCAGTAGATGATCTAAATACA CTGAGATCCTGCAACAAAGCAAAGGAGACTGCAGTTAGAACCATCAACTCTGAGGAGGCATCTAACTTCCGGGAGAAAATTGCATTGCTTGAGGTGCAGT TGAAGTCAAAGGAAACTGCATTTGAAACGTCCGTAGTTTCATTTATGCAGAAGGAAAGAGATCTCATGATGAAGATTGAAGAGTTGGAGCAAAGAGTGGA TGGATTTAACAAGTGCTGTGCAAATGTCACCAATGAACCGAAGTCCTTCATCATGTACGGCAATGATTGTAAGGAGGATGAGTTGGCAAGGGAGCTGTTA TCAGTGAAGGAGAGAAATGAAGAAATGGGAAGTGAACTAATGGAGATGCAGGAGAGGTATTCAGAAATGAGCTTAAAGTTTGCAGAAGTAGAAGGTGATA GGCAAAAGCTTTTGATGACAGTAAGGAGCTTGAAGAATGCTAGAAAGGAGCTCAAACAATAG
AA sequence Show only first row Show all	>Lus10008012 pacid=23161765 polypeptide=Lus10008012 locus=Lus10008012.g ID=Lus10008012.BGIv1.0 annot-version=v1.0 MFRPVRWRNDKHKIKVVFKFQFHATQVSELKNAESLVVSVVPGDVGKPTGKSEKAAIREGSSSWEYPVYETVKFSRDSKTGKINDKTYYFILSTGSIKSS IVGEALIDLAAYAQVAKPSLVSLPLKNSKTSGVLHVTIQKLQSSIDQREEEEIDTGNKTLNTLLSNGESEDTVSSFSNVDVLLHTADNISEQNGISTVTS GSDITLSSCGSSSGLIRPAENGSTMVYDGHPRTQCEWSVDSDQVMSVDGSTNSSHETLTGERSTQQMTDLEVERLKAELVTMSRQLDLSDLELQTLRKQI VKESRRGQDLLKELLGLKEERDTIYAECEKLKGFQKGMDEARSGNKLKSEGGDPWLLIGEIRQEMYYEKNRNANLQLQLQKTQESNAELLLAVRELEELW EKKGTETSETHDALPSESDDDDDEALEELIKEHTDTRETYMLDQRIMDLTREIAMYRRDKDELEMQMEQLALDYEISKQENHDLSYKVEQSQLQEQLEMQ YECSPPTSNENTLDIQIERLEDELKEQRIEYSVSLTKIKELENHVEILERELKFQEERTLQHECSSTNANTEELKGQIERLENELEKQQKDYSGSMDTIN ELQNRIKSLEEEAKLQESSILQHEAAAAKMKELKGQIERLETELKDQQNQNSGFLGTIKELETHISSMEDELEQQSQSFEVDLETITRERVEQEQRAIRA EEALRLTRWKNSKKAEKLQEEFRKLSMQMASTFEANEKVAIKSVAECSEVRIQKRQLEDMLLKANSELNYVKGDYKEKFVELSNQLNLKTNLVEKLLIEI DDMSKQLKCQKQHEEQLGGTFTQKVQKFQVEIEKLVRENSILSIQVDQLKNVKVELEEMKQSVKEHEELVQKGNAERKELVTTIALLKKEAEKSVDDLNT LRSCNKAKETAVRTINSEEASNFREKIALLEVQLKSKETAFETSVVSFMQKERDLMMKIEELEQRVDGFNKCCANVTNEPKSFIMYGNDCKEDELARELL SVKERNEEMGSELMEMQERYSEMSLKFAEVEGDRQKLLMTVRSLKNARKELKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41140			Myosin heavy chain-related pro...		Lus10008012 [exp]	0	1
AT1G67190			F-box/RNI-like superfamily pro...		Lus10020611 [exp]	4.5	0.8633
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10014727 [exp]	5.5	0.8278
AT5G56890			Protein kinase superfamily pro...		Lus10011933 [exp]	6.3	0.8548
AT3G59090			unknown protein		Lus10004930 [exp]	8.8	0.8742
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10013614 [exp]	11.6	0.8747
AT5G35570			O-fucosyltransferase family pr...		Lus10021557 [exp]	12.8	0.8267
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10039222 [exp]	16.0	0.8726
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10037705 [exp]	16.2	0.8539
AT3G59090			unknown protein		Lus10040880 [exp]	16.3	0.8861
AT5G35180			Protein of unknown function (D...		Lus10040015 [exp]	16.9	0.8058

Compare expression of checked genes

Lus10008012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.