Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35600 449 / 2e-156 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT2G17220 446 / 1e-155 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G76360 423 / 2e-145 Protein kinase superfamily protein (.1) AT5G02290 418 / 9e-145 NAK Protein kinase superfamily protein (.1.2) AT1G07570 408 / 1e-140 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 406 / 8e-140 APK1B protein kinase 1B (.1.2.3) AT2G39660 404 / 5e-139 BIK1 botrytis-induced kinase1 (.1) AT3G55450 395 / 6e-136 PBL1 PBS1-like 1 (.1.2) AT2G02800 392 / 3e-134 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 385 / 1e-131 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024512 [exp] 737 / 0 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10001392 [exp] 453 / 4e-158 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10023000 [exp] 451 / 4e-157 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10012256 [exp] 435 / 4e-151 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10016020 [exp] 431 / 2e-149 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10026546 [exp] 451 / 4e-149 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10023794 [exp] 420 / 7e-146 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 417 / 2e-144 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 417 / 2e-144 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G100900 [exp] 517 / 0 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.007G062700 [exp] 514 / 0 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G167400 [exp] 471 / 3e-165 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 467 / 1e-163 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G251900 [exp] 439 / 3e-152 AT1G76360 483 / 1e-168 Protein kinase superfamily protein (.1) Potri.016G094300 [exp] 426 / 1e-147 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 424 / 6e-147 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 423 / 1e-146 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G009400 [exp] 424 / 5e-146 AT1G76360 461 / 1e-159 Protein kinase superfamily protein (.1) Potri.008G056400 [exp] 421 / 1e-145 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008015 pacid=23161768 polypeptide=Lus10008015 locus=Lus10008015.g ID=Lus10008015.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCCTTGACTCCTGTTTCAAGTCGTCTGTTACTTCCTCCTCCATCACTTTCACCAATTCTTCTTCAGTCCAAGGCAGATCCTACACAACCA CCGCCATCACTGATTTGTCTGCTGCTACTGCTACGACCACCAGCATCAGCAGCAACAGCAATGGTACGGCCGCCAGAAGCCATTTCTCCGACACCAGCTA TGAAGTTGACTCCGAAAACTCCTTGCTCCCCGCCAACGGAAGCGGCCAAATTCTTGAGTGGGCGAACTTGAAAGTTTTCAGCTTGAGCGATTTGAAGTCC GCCACTAAGAACTTCAAATCCGACACCTTGCTCGGTGAAGGCGGGTTTGGTAAAGTCTTCAAAGGGTGGGTCGATGTACAAACCCTCTCCCCTTCCAAGC CCGGGATTGGTATGGTCGTCGCCGTCAAGAAATTGAACGATAAAAGTCTTCAAGGTTTCGAAGAGTGGCAGGCGGAGATTAACTTTCTGGGGAGGCTATC GCATCCAAACTTGGTCAAGTTGTTGGGATACTGTTGGGAGGATAAGGACTTGCTCCTCGTCTACGAATTCGTGGAGAAAGGGAGCTTGGAAAACCATCTT TTCGGAAGAAATGCGAGGGCTGAGCCACTACCTTGGGACCTAAGACTCAAAATAGCTCTTGGAGCTGCTCGAGGACTAGCCTTCTTGCATGCTTCTGAGA AGCAAATCATCTACCGAGATTTGAAGGCCTCCAATATTTTGCTTGATGCTAAATTCAATGCAAAGATTTCAGATTTTGGGTTGGCGAAGTTGGGGCCTGC AGGTGCTAACACACATGTCACAACCAGGGTTATGGGAACTTCTGGTTATGCAGCCCCTGAGTACATTACTACAGGTCATTTGTATGTGAAGAGCGATGTG TACGGATTCGGAGTAGTGTTGCTTGAGCTGTTGACAGGATTGAGAGCTCTGGATGAAAGTCGGCCGAGTGGGGAGCAAAACCTGGCGGATTGGCTGAAAC CGACTCTGTCGAAGAAAAGGAAGGTGAAAAACATAATGGATGAGAGGATTGAAGGGCAATACTCATCAAAAGCAATGCTACAAGCTACAGATATCACATT GAAATGCCTGGAAGTAGACCCCAAAAGCCGTCCGGGTATGGAACAAGTGGTGGAGGCTTTACAGCAGATACAAGCAATGGTTGTTGACAAACCAAAGGCT ACTTGTAAAAGTAGCAGTACTTCTTCTGGCTCTAGTTCTATCCATTCCACCGCTCATCGCCTTCCCAAACCCCCCAACAACCATCATCGGTTTGTGCGTT GA
AA sequence Show only first row Show all	>Lus10008015 pacid=23161768 polypeptide=Lus10008015 locus=Lus10008015.g ID=Lus10008015.BGIv1.0 annot-version=v1.0 MGNCLDSCFKSSVTSSSITFTNSSSVQGRSYTTTAITDLSAATATTTSISSNSNGTAARSHFSDTSYEVDSENSLLPANGSGQILEWANLKVFSLSDLKS ATKNFKSDTLLGEGGFGKVFKGWVDVQTLSPSKPGIGMVVAVKKLNDKSLQGFEEWQAEINFLGRLSHPNLVKLLGYCWEDKDLLLVYEFVEKGSLENHL FGRNARAEPLPWDLRLKIALGAARGLAFLHASEKQIIYRDLKASNILLDAKFNAKISDFGLAKLGPAGANTHVTTRVMGTSGYAAPEYITTGHLYVKSDV YGFGVVLLELLTGLRALDESRPSGEQNLADWLKPTLSKKRKVKNIMDERIEGQYSSKAMLQATDITLKCLEVDPKSRPGMEQVVEALQQIQAMVVDKPKA TCKSSSTSSGSSSIHSTAHRLPKPPNNHHRFVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10008015 [exp]	0	1
AT5G48290			Heavy metal transport/detoxifi...		Lus10025181 [exp]	2.0	0.9545
AT5G48290			Heavy metal transport/detoxifi...		Lus10016062 [exp]	2.4	0.9392
					Lus10034752 [exp]	2.8	0.9171
AT5G48290			Heavy metal transport/detoxifi...		Lus10016061 [exp]	2.8	0.9542
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10021531 [exp]	3.5	0.9120
					Lus10034740 [exp]	5.3	0.9165
AT3G07200			RING/U-box superfamily protein...		Lus10022569 [exp]	5.9	0.9168
AT1G47380			Protein phosphatase 2C family ...		Lus10009763 [exp]	6.5	0.8994
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001902 [exp]	6.9	0.9167
AT3G57120			Protein kinase superfamily pro...		Lus10027054 [exp]	8.1	0.9127

Compare expression of checked genes

Lus10008015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.