Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23850 329 / 3e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G63420 313 / 1e-102 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G48980 309 / 2e-101 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45830 290 / 4e-96 DTA2 downstream target of AGL15 2 (.1.2) AT3G61270 286 / 6e-93 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61280 251 / 5e-79 Arabidopsis thaliana protein of unknown function (DUF821) (.1), Arabidopsis thaliana protein of unknown function (DUF821) (.2) AT2G45840 249 / 2e-78 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61290 248 / 2e-78 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G07220 229 / 9e-71 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024519 [exp] 432 / 2e-149 AT1G63420 561 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10039228 [exp] 307 / 7e-101 AT5G23850 657 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037864 [exp] 263 / 6e-84 AT2G45830 520 / 0.0 downstream target of AGL15 2 (.1.2) Lus10039226 [exp] 260 / 1e-83 AT5G23850 563 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10040665 [exp] 236 / 1e-73 AT1G07220 688 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10018239 [exp] 232 / 5e-72 AT1G07220 686 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037863 [exp] 226 / 2e-69 AT5G23850 446 / 3e-152 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027472 [exp] 229 / 4e-69 AT5G23850 439 / 4e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027473 [exp] 180 / 2e-52 AT1G63420 531 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G125000 [exp] 354 / 2e-119 AT5G23850 603 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.014G081600 [exp] 328 / 5e-109 AT2G45830 613 / 0.0 downstream target of AGL15 2 (.1.2) Potri.015G144400 [exp] 319 / 1e-105 AT5G23850 659 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.002G157900 [exp] 281 / 4e-91 AT5G23850 537 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.002G157800 [exp] 280 / 6e-91 AT5G23850 513 / 5e-179 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G252000 [exp] 219 / 5e-67 AT1G07220 655 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G106500 [exp] 70 / 8e-15 AT3G48980 85 / 1e-20 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF05686 [flax] [poplar] Glyco_transf_90 Glycosyl transferase family 90
Representative CDS sequence Show only first row Show all	>Lus10008017 pacid=23161766 polypeptide=Lus10008017 locus=Lus10008017.g ID=Lus10008017.BGIv1.0 annot-version=v1.0 ATGAGGCAGCAGAGTGACACTACTATCATGGAGATGATTCTGGCGAATTTGAAGAAGAAGGGCCCTGCAACTCTAAGAGCCCTCTTCTTCCTCTTCTTCT TTCTCCTTCTCTTCATTACTGTCTACATCTCCTCCACTCTTCTCAGGAAGTACCCTGGAAAGCTGCCCGATTTGGAGCTCATGTTTGACTGCGACGACCG CCCGGTCATCCGTTCCGAAGACTACAAGGAGGCGGCGGCCGCCCTTCCGCCGCCGTTGTTTCGGTACTGCGGTGACAGGTGGACCATGGACATCGTATTC CCTGATTGGTCCTTTTGGGGATGGGCAGAGATAAACATAAGGCCATGGCGTAACTTGCTGAAAGAAGTGAAAGAAGGAAACGAGAGGACGAAATGGGAAG AAAGGGAGCCTTATGCTTACTGGAAAGGAAACCCTTTTGTTGCAGACGATAGGAAGGATCTCCTCACTTGCAATGTCTCCCATGAACATGACTGGGGTGC TCGCCTTTTCATCCAGGATTGGATCAAGGAATCCCAACAAGGATTCAAAGAATCAAGCTTGGCGAACCAATGCACATACAAGTACAAAATCTACATCGAG GGTTATGCATGGTCTGTGAGTGAGAAGAGGTTAGAGCCTCTCGTTCACTACTGCCCGTTGAAAAAAGAAACAAATGCCAATCCTGCAATCGGAAAAGTAG CTAGTGCCTTCATGCACAAGAAAGTAAACATGGACTACATCTATGACTACACGTTCCACTTGTTAAGTGAGTACGGAAAGCTCCAGAGGTTTGAACCTCG AGTCCCGACCACGGCTGTCGAGGTTTGCCCGGAGAGCATGGCTTGTGCCGGAGATGAGGATGATGTGTTAGGGTTAGGGTTGATGAAGAAGTTTATGTTG GAGTCGCTGGTGAAGAGTCATTCTTTGAAAGATAATAACATGCTTAACTGGTTGCAGCTAGATCATCGCTCGGAGGCATTATATGATGTCGTTTTAGCGG CCGTAGTGGTGGAATTGGGGCAGGATAAACTTGAGCCACCGCCCAGGGTCTTTTGA
AA sequence Show only first row Show all	>Lus10008017 pacid=23161766 polypeptide=Lus10008017 locus=Lus10008017.g ID=Lus10008017.BGIv1.0 annot-version=v1.0 MRQQSDTTIMEMILANLKKKGPATLRALFFLFFFLLLFITVYISSTLLRKYPGKLPDLELMFDCDDRPVIRSEDYKEAAAALPPPLFRYCGDRWTMDIVF PDWSFWGWAEINIRPWRNLLKEVKEGNERTKWEEREPYAYWKGNPFVADDRKDLLTCNVSHEHDWGARLFIQDWIKESQQGFKESSLANQCTYKYKIYIE GYAWSVSEKRLEPLVHYCPLKKETNANPAIGKVASAFMHKKVNMDYIYDYTFHLLSEYGKLQRFEPRVPTTAVEVCPESMACAGDEDDVLGLGLMKKFML ESLVKSHSLKDNNMLNWLQLDHRSEALYDVVLAAVVVELGQDKLEPPPRVF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23850			Arabidopsis thaliana protein o...		Lus10008017 [exp]	0	1
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10008631 [exp]	2.2	0.8444
AT5G19070			SNARE associated Golgi protein...		Lus10034028 [exp]	3.7	0.8228
AT5G38895			RING/U-box superfamily protein...		Lus10034367 [exp]	4.2	0.8017
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10028277 [exp]	6.9	0.7990
AT3G24740			Protein of unknown function (D...		Lus10022809 [exp]	8.4	0.7937
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10037447 [exp]	16.7	0.7488
AT5G38900			Thioredoxin superfamily protei...		Lus10005083 [exp]	16.9	0.7635
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	17.5	0.7893
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	18.7	0.7492
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10033105 [exp]	19.2	0.7586

Compare expression of checked genes

Lus10008017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.