Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63430 843 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 731 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G45840 291 / 5e-89 Leucine-rich repeat protein kinase family protein (.1.2) AT4G18640 253 / 9e-75 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT1G31420 206 / 4e-58 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT5G58540 196 / 7e-57 Protein kinase superfamily protein (.1.2.3) AT3G56050 197 / 9e-56 Protein kinase family protein (.1.2) AT2G40270 187 / 3e-52 Protein kinase family protein (.1.2) AT5G07280 191 / 7e-51 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G62710 186 / 7e-51 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008310 [exp] 1295 / 0 AT1G63430 857 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10001489 [exp] 1076 / 0 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008486 [exp] 1073 / 0 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 295 / 1e-90 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007516 [exp] 286 / 4e-87 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025400 [exp] 280 / 6e-85 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 263 / 1e-78 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 239 / 2e-69 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10031860 [exp] 232 / 4e-67 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124800 [exp] 962 / 0 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G106600 [exp] 959 / 0 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.011G067400 [exp] 329 / 9e-103 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.004G058100 [exp] 318 / 7e-99 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.008G072100 [exp] 296 / 2e-91 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.010G185300 [exp] 257 / 2e-76 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.009G075400 [exp] 249 / 4e-73 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 245 / 1e-71 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.007G009200 [exp] 198 / 2e-53 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G105000 [exp] 191 / 2e-52 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008018 pacid=23161761 polypeptide=Lus10008018 locus=Lus10008018.g ID=Lus10008018.BGIv1.0 annot-version=v1.0 ATGAGATCATACGTGCAGTTGCAACTTCTTTCTGGTGTTGCATCTTTACTTCTCTTTGCGGCTTGCCAGTCCTTTCCACAGGACGAAGTTTCTGGCCTGA AGGGATTCAAGGAAGCGATATATGAAGACTCTCTTCTGATTTTGTCCAGCTGGACTGCTCTAGATACGAATCCTTGTGAGTGGTCTGGTGTATATTGCTC TTCTACTGGAGACCATGTTGTGAAGATAAACATATCTGGATCATCTCTTGGTGGGTTTATCTCTCCAGATTTTAGCAGGATCGCATACTTGCAGGAACTT ATCTTGCATGGAAACAATCTGATTGGATCCATCCCAAAAGAACTGGGCATGCTTAAGCAGCTTAAAAGGTTGGATTTAGGAGCTAATCAACTCTCTGGTC CAATTCCCCCAGAGCTGGCAACTATATCCGGCATCTTGAAAATAAACCTCCAGGCTAATTGGCTAACTGGGAGTCTGCCTTCTGAGTTTGGCAGTTTAAA ATACCTTCAGGAACTTTTCCTAGATAGGAACAGACTCCAGGGTACTGTTCCAGCTAGTAAAAGTTTCGCTTCCAACATTCATGGACTGTACTCTTCAGGG GGGAACATTACTGGTCTCTGTCAAGCATCTAACCTGAAAGTAGCGGATTTCTCTTACAATTTCTTTACTGGACCCATACCTAAATGCTTGGGCCACCTTC CACGCGCAAGTTTTCAAGGCAACTGCCTCCAGAACAAGGAAACAAAGCAGCGCACTGCTGCACAATGCAGCACATTTTCTGGTCCCAAACCTGTCAGAAA CCATGGAGCCTTTAACCCCAAGCAGCACCAGCCTGCTGAAGCTGTTTCCGAGGAGCATCAGGGAAAATCAAAACCGGTATGGTTATTGGTTTTGGAAGTA GTGACAGGAACCATGGTGGGAGCTGTCTTTGTCATGTTTCTTTTGACTGCCTTCCAGAGATGGAATACCAAATCTGATATTATAATGCCTTGGAAGAAGT CAGTAAGTCGGAAGGAAAATGTGACCGTATACATAGACTCTGAGATGCTGAAAGACGTGGCAAATTTCAACAGACAAGAACTGGAGATAGCATGTGAAGA ATTCAGTAATATCATTGACTCTTCCCCAGATAGTTTGGTTTATAAAGGGAACTTGAAAGGAGGTCCTGAGATTGCTGTCATATCTTTCTGTATCAAAGAG GAACAATGGAGTGGCTACCTTGAACTCTATTTTCAGAGGGAGGTTGCAGATTTGGCAAGATTAAATCATGAGAATGCCGGGAAGTTGCTTGGTTATTGTA AAGAGAGCAGTCCATTTACTAGGATGCTAGTTTTTGAATATTCGTCGAATGGAACCTTAAATGAGCACCTTCATTGTGGAGAGGAATGTCAACTATCTTG GACGAGGCGCATGAAAATTGTAATATGCATCGCTCGTGGTCTTAAGTACCTTCACATAGAACTCGACCCACCCTTCACAATATCAGAGTTGAATTCTAGT GCTGTTTACCTAACAGATGACTTCTCCCCCAAGCTGGTGGATTTTGAGAGTTGGAAGAGCATTCTTTCCAGATCAGAAAAGATCTCCGGATCCATTGGAG GCCAAGGTGCCATCTGCGTGCTTCCAAATTCGATGGAAGCACGCCACCTTGACATTCAAGGCAATGTCTATGCTTTTGGCATACTGTTGCTCGAGATAAT CAGTGGCAGGCCTCCATACTGCAAAGACAAAGGGTCCATAGTCGACTGGGCTAAGGACATGCTTGATGTCCCGGAGGCAATGTCTTACCTGGTAGATCCC GAGCTGAAGAATTTCAAATACGATGACCTGAAAGCTATATGTGAAGTGGTAACCCTGAGCATCCATCCAGATGCGAAAAAGAGACCATCAATGCGGGTGG TATGCACGATGCTGGAAAGCAGGATCGACACATCTGTGTTTTTCGACTTTAAGGCATCTTCATTAGCATGGGCTGAGCATGCATTGTCATCGCAGTAG
AA sequence Show only first row Show all	>Lus10008018 pacid=23161761 polypeptide=Lus10008018 locus=Lus10008018.g ID=Lus10008018.BGIv1.0 annot-version=v1.0 MRSYVQLQLLSGVASLLLFAACQSFPQDEVSGLKGFKEAIYEDSLLILSSWTALDTNPCEWSGVYCSSTGDHVVKINISGSSLGGFISPDFSRIAYLQEL ILHGNNLIGSIPKELGMLKQLKRLDLGANQLSGPIPPELATISGILKINLQANWLTGSLPSEFGSLKYLQELFLDRNRLQGTVPASKSFASNIHGLYSSG GNITGLCQASNLKVADFSYNFFTGPIPKCLGHLPRASFQGNCLQNKETKQRTAAQCSTFSGPKPVRNHGAFNPKQHQPAEAVSEEHQGKSKPVWLLVLEV VTGTMVGAVFVMFLLTAFQRWNTKSDIIMPWKKSVSRKENVTVYIDSEMLKDVANFNRQELEIACEEFSNIIDSSPDSLVYKGNLKGGPEIAVISFCIKE EQWSGYLELYFQREVADLARLNHENAGKLLGYCKESSPFTRMLVFEYSSNGTLNEHLHCGEECQLSWTRRMKIVICIARGLKYLHIELDPPFTISELNSS AVYLTDDFSPKLVDFESWKSILSRSEKISGSIGGQGAICVLPNSMEARHLDIQGNVYAFGILLLEIISGRPPYCKDKGSIVDWAKDMLDVPEAMSYLVDP ELKNFKYDDLKAICEVVTLSIHPDAKKRPSMRVVCTMLESRIDTSVFFDFKASSLAWAEHALSSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63430			Leucine-rich repeat protein ki...		Lus10008018 [exp]	0	1
AT3G03810		EDA30	embryo sac development arrest ...		Lus10013612 [exp]	2.2	0.7127
AT3G55060			unknown protein		Lus10001974 [exp]	6.7	0.6802
AT3G10540			3-phosphoinositide-dependent p...		Lus10017448 [exp]	9.4	0.6477
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	18.2	0.6794
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022077 [exp]	20.8	0.6908
AT1G67190			F-box/RNI-like superfamily pro...		Lus10004875 [exp]	26.1	0.6187
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10008002 [exp]	29.9	0.6324
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Lus10035085 [exp]	33.7	0.5931
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10032362 [exp]	33.8	0.6384
AT4G19020		CMT2	chromomethylase 2 (.1)		Lus10010796 [exp]	43.5	0.6348

Compare expression of checked genes

Lus10008018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.