Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41210 173 / 6e-54 GSTU12, GST10, ATGSTT1 glutathione S-transferase THETA 1 (.1) AT5G41240 164 / 2e-47 GST10B, ATGSTT2 glutathione S-transferase THETA 2 (.1) AT5G41220 159 / 2e-45 GST10C, ATGSTT3 glutathione S-transferase THETA 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008308 [exp] 265 / 9e-90 AT5G41210 347 / 4e-122 glutathione S-transferase THETA 1 (.1) Lus10000606 [exp] 234 / 6e-78 AT5G41240 351 / 1e-123 glutathione S-transferase THETA 2 (.1) Lus10008021 [exp] 229 / 9e-76 AT5G41210 348 / 1e-122 glutathione S-transferase THETA 1 (.1) Lus10026643 [exp] 40 / 0.0007 AT2G47730 269 / 2e-91 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G105600 [exp] 177 / 3e-55 AT5G41210 358 / 1e-126 glutathione S-transferase THETA 1 (.1) Potri.003G125800 [exp] 166 / 2e-51 AT5G41210 327 / 2e-114 glutathione S-transferase THETA 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008020 pacid=23161778 polypeptide=Lus10008020 locus=Lus10008020.g ID=Lus10008020.BGIv1.0 annot-version=v1.0 ATGGAAGATTCAAGCTGTTTGAGAGGTAGTCAATGCCCTCTTAATTTGTATAGCCATGCAATCCTTATCTATCTAGCTTCAGTGTTTCCGGGAGTTGCTG ATCACTGTTTTATAGGAAGCATGAAAAATAATTTGAAGCATTTGTTTCATCAAGGTATCCAGCTGACCTTTTCAGAAGAGCTAAGATTCAGTAAGTTCTT GACTGGCATCACTCCAACTTGCACGGCGGTTCAGGTCTGCATCTCTCAACACATCCTAGAAAGTTTTGGATTTGTTTTCAACAAGGCTATAGCGCCTGCA TTTGGACTGCTTTTGAATCCACGAGCAGCGGTACAAGGTGAAAAGAAATTAACTTCAGCATTAGCAAAGTTGGAATCTTTCTGGCTCAAGGGTAGTGGGA AATACTTGCTTGGTGGGAATCAGCCATCTATAGCAGATCTCAGCCTCGTATGTGAGTTAATGAAATTGGAGGTTTTGGATGAAATAGACCGAAACCGAGT TCTTGGCCGTCACAAGAAGGTTGTGCAATGGATCAAGGACACAAAGCATGCAACTCAACCTCATTTTGATGAATTTTTGCATCTTGTTCTCTTCAAAGTG AAAGAGAAGCTCCAGACGTTGCAGTCCATGGGAGCAAACGATGACACTGAATCTAGCTTAAACAAAGAATTTCACTCTCGGATGTAG
AA sequence Show only first row Show all	>Lus10008020 pacid=23161778 polypeptide=Lus10008020 locus=Lus10008020.g ID=Lus10008020.BGIv1.0 annot-version=v1.0 MEDSSCLRGSQCPLNLYSHAILIYLASVFPGVADHCFIGSMKNNLKHLFHQGIQLTFSEELRFSKFLTGITPTCTAVQVCISQHILESFGFVFNKAIAPA FGLLLNPRAAVQGEKKLTSALAKLESFWLKGSGKYLLGGNQPSIADLSLVCELMKLEVLDEIDRNRVLGRHKKVVQWIKDTKHATQPHFDEFLHLVLFKV KEKLQTLQSMGANDDTESSLNKEFHSRM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008020 [exp]	0	1
AT1G53400			Ubiquitin domain-containing pr...		Lus10007315 [exp]	10.2	0.7643
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10040071 [exp]	10.8	0.7644
AT2G27500			Glycosyl hydrolase superfamily...		Lus10004869 [exp]	11.3	0.7561
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10006842 [exp]	20.0	0.7424
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10041446 [exp]	22.6	0.7609
AT1G53400			Ubiquitin domain-containing pr...		Lus10029264 [exp]	25.1	0.7479
					Lus10034752 [exp]	25.4	0.7546
AT1G80940			unknown protein		Lus10024095 [exp]	28.1	0.7267
					Lus10041155 [exp]	33.2	0.7054
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10024263 [exp]	35.7	0.7510

Compare expression of checked genes

Lus10008020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.