Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41210 315 / 1e-109 GSTU12, GST10, ATGSTT1 glutathione S-transferase THETA 1 (.1) AT5G41240 305 / 8e-101 GST10B, ATGSTT2 glutathione S-transferase THETA 2 (.1) AT5G41220 296 / 1e-97 GST10C, ATGSTT3 glutathione S-transferase THETA 3 (.1) AT2G30860 70 / 2e-14 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT2G30870 64 / 2e-12 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT2G02930 54 / 1e-08 GST16, ATGSTF3 GLUTATHIONE S-TRANSFERASE 16, glutathione S-transferase F3 (.1) AT3G03190 52 / 6e-08 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT3G62760 52 / 6e-08 ATGSTF13 Glutathione S-transferase family protein (.1) AT1G02930 51 / 9e-08 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT1G02920 51 / 1e-07 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000606 [exp] 444 / 1e-160 AT5G41240 351 / 1e-123 glutathione S-transferase THETA 2 (.1) Lus10008308 [exp] 405 / 4e-145 AT5G41210 347 / 4e-122 glutathione S-transferase THETA 1 (.1) Lus10008020 [exp] 199 / 3e-64 AT5G41210 174 / 4e-54 glutathione S-transferase THETA 1 (.1) Lus10029815 [exp] 62 / 3e-11 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10020735 [exp] 61 / 3e-11 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10026643 [exp] 60 / 1e-10 AT2G47730 269 / 2e-91 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10037121 [exp] 56 / 2e-09 AT2G47730 243 / 2e-81 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10030414 [exp] 56 / 4e-09 AT2G47730 267 / 1e-90 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10005634 [exp] 54 / 1e-08 AT2G30860 177 / 1e-55 glutathione S-transferase PHI 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G105600 [exp] 352 / 6e-124 AT5G41210 358 / 1e-126 glutathione S-transferase THETA 1 (.1) Potri.003G125800 [exp] 323 / 5e-113 AT5G41210 327 / 2e-114 glutathione S-transferase THETA 1 (.1) Potri.004G232600 [exp] 58 / 5e-10 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Potri.002G207479 [exp] 52 / 7e-08 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207672 [exp] 52 / 8e-08 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.002G015200 [exp] 50 / 2e-07 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G207286 [exp] 50 / 3e-07 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.014G132200 [exp] 49 / 5e-07 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.017G138800 [exp] 49 / 8e-07 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G207093 [exp] 46 / 5e-06 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008021 pacid=23161782 polypeptide=Lus10008021 locus=Lus10008021.g ID=Lus10008021.BGIv1.0 annot-version=v1.0 ATGACTCTCAAAGTCTATGTGGATCGGATGTCCCAGCCTTCCAGGGCTGTCATTCTCTTCTGCAAGCTGAATAGAATCGACTTTGAGGAGATCAAAGTGG ACTTGGCCAAGCGTCAACATTTATCTCCTGAATATGCAGATATAAACCCTATGAAGGCAGTGCCTGCTATTGTTGATGGAAGATTCAAACTGTTCGAGAG CCATGCAATCCTTATCTATCTAGCTTGCGTATTTCCGGGAGTTGCTGATCACTGGTATCCAGCTGATGTTTTCAGAAGAGCTAAGATTCAGTCAGTCCTT GACTGGCATCACTCCAACTTGCGGCGCGGAGCAGTTGGATTAGTTTTCAACAAGGCTTTGGCGCCTGCACTTGGACTACCTTTGAATCCACAAGCAGCTG CAGAAGGTGAAAAGATTCTAACTTCAGCCTTATCAAAGTTGGAATCTTTCTGGCTCAAGGGTAGTGGGAAATACTTGCTTGGCGGGAATCAGCCATCTAT AGCAGATATCAGCCTCGTATGCGAGTTAATGCAATTGGAGGTTTTGGATGAAACAGACCGAGACCGTGTTCTTGGCCCTCACAAGAAGGTTGTCCAATGG ATCAAGGACACAAAGCATGCAACTCAACCTGACTTTGATGAAGTGCACCAGGTCCTCTTCCAAGTGAAAGAGAAGCTGAAGCCGTTGCAGTCCATGGAAG CAAACAAAAAAGTTCACTCCCGGATGTAG
AA sequence Show only first row Show all	>Lus10008021 pacid=23161782 polypeptide=Lus10008021 locus=Lus10008021.g ID=Lus10008021.BGIv1.0 annot-version=v1.0 MTLKVYVDRMSQPSRAVILFCKLNRIDFEEIKVDLAKRQHLSPEYADINPMKAVPAIVDGRFKLFESHAILIYLACVFPGVADHWYPADVFRRAKIQSVL DWHHSNLRRGAVGLVFNKALAPALGLPLNPQAAAEGEKILTSALSKLESFWLKGSGKYLLGGNQPSIADISLVCELMQLEVLDETDRDRVLGPHKKVVQW IKDTKHATQPDFDEVHQVLFQVKEKLKPLQSMEANKKVHSRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008021 [exp]	0	1
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	2.0	0.9686
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	2.6	0.9688
AT4G17900			PLATZ transcription factor fam...		Lus10004577 [exp]	6.7	0.9605
AT1G30190			unknown protein		Lus10023301 [exp]	7.5	0.9456
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	7.7	0.9497
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10005983 [exp]	7.9	0.9467
AT5G61820			unknown protein		Lus10017315 [exp]	8.7	0.9544
AT4G22310			Uncharacterised protein family...		Lus10023745 [exp]	9.7	0.9504
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Lus10020436 [exp]	10.6	0.9472
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10038219 [exp]	12.0	0.9429

Compare expression of checked genes

Lus10008021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.