Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11600 302 / 1e-105 LSC803, PHGPX, ATGPX6 glutathione peroxidase 6 (.1) AT4G31870 252 / 6e-86 ATGPX7 glutathione peroxidase 7 (.1) AT2G31570 248 / 3e-85 ATGPX2 glutathione peroxidase 2 (.1) AT1G63460 246 / 2e-84 ATGPX8 glutathione peroxidase 8 (.1) AT2G25080 243 / 4e-82 ATGPX1 glutathione peroxidase 1 (.1) AT2G43350 236 / 5e-80 ATGPX3 glutathione peroxidase 3 (.1.2) AT3G63080 232 / 5e-79 ATGPX5, MEE42 maternal effect embryo arrest 42, glutathione peroxidase 5 (.1) AT2G48150 229 / 5e-78 ATGPX4 glutathione peroxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008499 [exp] 320 / 7e-113 AT4G11600 307 / 2e-106 glutathione peroxidase 6 (.1) Lus10008537 [exp] 316 / 3e-112 AT4G11600 299 / 1e-104 glutathione peroxidase 6 (.1) Lus10000603 [exp] 299 / 2e-105 AT4G11600 256 / 9e-88 glutathione peroxidase 6 (.1) Lus10027021 [exp] 258 / 4e-89 AT2G31570 266 / 2e-92 glutathione peroxidase 2 (.1) Lus10008023 [exp] 259 / 2e-88 AT1G63460 265 / 9e-91 glutathione peroxidase 8 (.1) Lus10000601 [exp] 255 / 3e-88 AT1G63460 256 / 2e-88 glutathione peroxidase 8 (.1) Lus10026887 [exp] 249 / 2e-84 AT4G31870 332 / 3e-116 glutathione peroxidase 7 (.1) Lus10042418 [exp] 248 / 2e-84 AT4G31870 329 / 2e-115 glutathione peroxidase 7 (.1) Lus10029651 [exp] 245 / 4e-84 AT2G48150 274 / 2e-95 glutathione peroxidase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G105200 [exp] 305 / 6e-108 AT4G11600 298 / 3e-104 glutathione peroxidase 6 (.1) Potri.003G126100 [exp] 306 / 3e-107 AT4G11600 307 / 9e-107 glutathione peroxidase 6 (.1) Potri.001G105100 [exp] 273 / 4e-95 AT1G63460 283 / 5e-99 glutathione peroxidase 8 (.1) Potri.007G126600 [exp] 263 / 1e-90 AT2G31570 281 / 1e-97 glutathione peroxidase 2 (.1) Potri.006G265400 [exp] 248 / 2e-84 AT2G25080 343 / 6e-121 glutathione peroxidase 1 (.1) Potri.014G138800 [exp] 231 / 8e-79 AT2G48150 271 / 1e-94 glutathione peroxidase 4 (.1) Potri.018G017500 [exp] 166 / 8e-53 AT2G25080 209 / 4e-69 glutathione peroxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00255 [flax] [poplar] GSHPx Glutathione peroxidase
Representative CDS sequence Show only first row Show all	>Lus10008022 pacid=23161769 polypeptide=Lus10008022 locus=Lus10008022.g ID=Lus10008022.BGIv1.0 annot-version=v1.0 ATGGCTACCAATTCCGACTCTCCTAAGTCCATCTACGACTTCACTGTCAAGGATGCTAGAGGGAATGATGTTGATCTCAGTATTTATAAGGGAAAAGTTC TGTTGATTGTTAATGTTGCCTCCCAATGTGGATTGACCAATTCCAACTATACTGAGTTGACTCAACTGTACCAGAAATACAAAGATCAAGGTATGGAGAT CTTGGCTTTTCCTTGCAATCAGTTCGGGTCTCAGGAACCAGGCAACAATGATCAAATTGTGGAGTTTGCTTGTACTCGTTTCAAGGCCGAGTTCCCCATA TTCGATAAGGTTGATGTGAATGGAAAAGAGGCTGCTCCAATCTACAAGTACCTCAAGGCGAGCAAAGGTGGACTCTTTGGGGATGGTATCAAGTGGAACT TCACCAAGTTCCTCGTCAACAAAGAGGGTCAGGTGGTCGATCGCTATGCTCCTACCACCTCCCCTCTCAGCATTGAGAAAGATGTGAAGAAGCTGCTTGG GATTACATCGAAGCAATGA
AA sequence Show only first row Show all	>Lus10008022 pacid=23161769 polypeptide=Lus10008022 locus=Lus10008022.g ID=Lus10008022.BGIv1.0 annot-version=v1.0 MATNSDSPKSIYDFTVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELTQLYQKYKDQGMEILAFPCNQFGSQEPGNNDQIVEFACTRFKAEFPI FDKVDVNGKEAAPIYKYLKASKGGLFGDGIKWNFTKFLVNKEGQVVDRYAPTTSPLSIEKDVKKLLGITSKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008022 [exp]	0	1
AT3G50910			unknown protein		Lus10041772 [exp]	2.4	0.8069
AT1G13340			Regulator of Vps4 activity in ...		Lus10034303 [exp]	5.3	0.7855
AT5G64230			unknown protein		Lus10010617 [exp]	7.5	0.7901
AT1G76570			Chlorophyll A-B binding family...		Lus10005421 [exp]	7.9	0.7822
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10006056 [exp]	9.2	0.7877
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10011606 [exp]	9.5	0.8148
AT4G02920			unknown protein		Lus10027996 [exp]	9.6	0.8026
AT3G59080			Eukaryotic aspartyl protease f...		Lus10020759 [exp]	13.6	0.7831
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	14.4	0.7625
AT5G64230			unknown protein		Lus10033177 [exp]	16.7	0.7802

Compare expression of checked genes

Lus10008022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.