Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63460 265 / 2e-90 ATGPX8 glutathione peroxidase 8 (.1) AT4G11600 247 / 1e-82 LSC803, PHGPX, ATGPX6 glutathione peroxidase 6 (.1) AT4G31870 224 / 1e-73 ATGPX7 glutathione peroxidase 7 (.1) AT2G43350 221 / 6e-73 ATGPX3 glutathione peroxidase 3 (.1.2) AT2G31570 219 / 2e-72 ATGPX2 glutathione peroxidase 2 (.1) AT2G25080 215 / 6e-70 ATGPX1 glutathione peroxidase 1 (.1) AT3G63080 211 / 2e-69 ATGPX5, MEE42 maternal effect embryo arrest 42, glutathione peroxidase 5 (.1) AT2G48150 207 / 8e-68 ATGPX4 glutathione peroxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000601 [exp] 313 / 2e-109 AT1G63460 256 / 2e-88 glutathione peroxidase 8 (.1) Lus10008022 [exp] 259 / 4e-88 AT4G11600 301 / 1e-105 glutathione peroxidase 6 (.1) Lus10008499 [exp] 260 / 1e-87 AT4G11600 307 / 2e-106 glutathione peroxidase 6 (.1) Lus10008537 [exp] 258 / 1e-87 AT4G11600 299 / 1e-104 glutathione peroxidase 6 (.1) Lus10027021 [exp] 235 / 1e-78 AT2G31570 266 / 2e-92 glutathione peroxidase 2 (.1) Lus10000603 [exp] 228 / 7e-76 AT4G11600 256 / 9e-88 glutathione peroxidase 6 (.1) Lus10042418 [exp] 226 / 3e-74 AT4G31870 329 / 2e-115 glutathione peroxidase 7 (.1) Lus10029651 [exp] 218 / 6e-72 AT2G48150 274 / 2e-95 glutathione peroxidase 4 (.1) Lus10026887 [exp] 218 / 4e-71 AT4G31870 332 / 3e-116 glutathione peroxidase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G105100 [exp] 281 / 2e-96 AT1G63460 283 / 5e-99 glutathione peroxidase 8 (.1) Potri.003G126100 [exp] 259 / 2e-87 AT4G11600 307 / 9e-107 glutathione peroxidase 6 (.1) Potri.001G105200 [exp] 247 / 2e-83 AT4G11600 298 / 3e-104 glutathione peroxidase 6 (.1) Potri.007G126600 [exp] 235 / 2e-78 AT2G31570 281 / 1e-97 glutathione peroxidase 2 (.1) Potri.006G265400 [exp] 218 / 2e-71 AT2G25080 343 / 6e-121 glutathione peroxidase 1 (.1) Potri.014G138800 [exp] 211 / 2e-69 AT2G48150 271 / 1e-94 glutathione peroxidase 4 (.1) Potri.018G017500 [exp] 148 / 2e-44 AT2G25080 209 / 4e-69 glutathione peroxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00255 [flax] [poplar] GSHPx Glutathione peroxidase
Representative CDS sequence Show only first row Show all	>Lus10008023 pacid=23161764 polypeptide=Lus10008023 locus=Lus10008023.g ID=Lus10008023.BGIv1.0 annot-version=v1.0 ATGTCGAGCGAAGCACAACTGAGCCCAGATTCCATATACGATTTCACTGTAAAGAATGCTAAGGGAAATGATGTAAGTCTCGGTATCTACAAGGGGAAGG TCCTGCTTATTATCAATGTTGCTTCCAAATGTGGCATGACCAACTCAAACTACACGGAGCTGAATGATTTGTATCACAAGTACAAAGATCAAGGGTTGGA GATACTGGCATTCCCTTGCAACCAGTTTGGAGCCGAAGAACCTGGAAGCAACGACGAGATTGAAGCATTCGTTTGCAGTCGGTTCAAGTCCGAGTTCCCC ATATTCAACAAGATTGAGGTGAATGGAGAGAATGCATCCCCACTGTACAAGTTGTTGAAGACAGGGAAATGGGGAATTTTCGGTGACGACATCCAATGGA ACTTTGTCAAGTTCCTTGTCAACAAACAAGGCCAAGTTGTTGATCGTTACTACCCAACAACTTCTCCCCTAAGCATCGAGAAGGGGACGGAGAAGATCAT TGACGTTGACAATGGCGATCTGAGTATTGAGTCGATCTTTAGCTACGATGGAGGGTTTGTGCCAACGTTGTTCGACAGCTTTCGCATGAAAATAATTGTG GTGAAATCAGCCGCCCAAATCAGAGCTGCTGGGTGCATACTTAAATTGGAGTTCGATTACGGTAGATCGGAAGGCAACGCAGACATAACCTACTTCAAGA ATGTGATGACAGATGCTTACAAAGATCTGGACAACTACCTTAGGAATAACAGCCCCAGTGAAAGACGATGGTGA
AA sequence Show only first row Show all	>Lus10008023 pacid=23161764 polypeptide=Lus10008023 locus=Lus10008023.g ID=Lus10008023.BGIv1.0 annot-version=v1.0 MSSEAQLSPDSIYDFTVKNAKGNDVSLGIYKGKVLLIINVASKCGMTNSNYTELNDLYHKYKDQGLEILAFPCNQFGAEEPGSNDEIEAFVCSRFKSEFP IFNKIEVNGENASPLYKLLKTGKWGIFGDDIQWNFVKFLVNKQGQVVDRYYPTTSPLSIEKGTEKIIDVDNGDLSIESIFSYDGGFVPTLFDSFRMKIIV VKSAAQIRAAGCILKLEFDYGRSEGNADITYFKNVMTDAYKDLDNYLRNNSPSERRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008023 [exp]	0	1
AT4G21192			Cytochrome c oxidase biogenesi...		Lus10019246 [exp]	1.4	0.8885
AT1G55340			Protein of unknown function (D...		Lus10013616 [exp]	2.0	0.8883
AT3G61113			Ubiquitin related modifier 1 (...		Lus10036551 [exp]	5.7	0.8706
AT1G12650			unknown protein		Lus10020336 [exp]	7.1	0.8168
AT3G11591			unknown protein		Lus10016986 [exp]	7.9	0.8368
AT5G64180			unknown protein		Lus10013157 [exp]	8.1	0.8284
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Lus10040543 [exp]	10.7	0.8570
AT4G16710			glycosyltransferase family pro...		Lus10028587 [exp]	11.8	0.8214
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10042022 [exp]	12.0	0.8497
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10041158 [exp]	12.0	0.8104

Compare expression of checked genes

Lus10008023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.